RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DHRSXQ8N5I4 330 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 PACRGLQ8N7B6 248 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 ZNF565Q8N9K5 539 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 SUMF2Q8NBJ7 301 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 OR52N1Q8NH53 320 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 OR9G1Q8NH87 305 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 RFESDQ8TAC1 157 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 MRGPRDQ8TDS7 321 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 RBM14Q96PK6 669 aaKnown RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 SLC25A33Q9BSK2 321 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 DPCDQ9BVM2 203 aaPredicted RBP8.64□□□□□ -1.03
VPS39-208ENST00000564994 BARHL1Q9BZE3 327 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 IDI2-AS1Q9NZ38 188 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 IL36GQ9NZH8 169 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 ING4Q9UNL4 249 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 ST3GAL6Q9Y274 331 aa8.64□□□□□ -1.03
VPS39-208ENST00000564994 TRAV8-7A0A075B6U6 113 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A18PA6NE21 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A16PA6NEW6 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A20PA6NIJ5 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A9PA6NNJ1 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A12PA8MX19 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A5PA8MXJ8 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 J3QR06 171 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 PEX14O75381 377 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 GPX5O75715 221 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 OR7C1O76099 320 aaPredicted RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 OR2F2O95006 317 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 LPLP06858 475 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A15PP0C7V4 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A13PP0C7W8 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A14PP0C7W9 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 FAM90A24PP0C7X0 464 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 SERPINA2P20848 420 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 C21orf33P30042 268 aaPredicted RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 SSTR5P35346 364 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 CEACAM3P40198 252 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 KCNJ3P48549 501 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 RBM11P57052 281 aaKnown RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 PPP3R1P63098 170 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 EMX1Q04741 257 aaPredicted RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 ST3GAL4Q11206 333 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 RIPK1Q13546 671 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 RCN1Q15293 331 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 ABCA11PQ4W5N1 156 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 TCTEX1D4Q5JR98 221 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 KPRPQ5T749 579 aaPredicted RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 SETD9Q8NE22 299 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 OR5AU1Q8NGC0 362 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 CREB3L1Q96BA8 519 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 ZNF184Q99676 751 aaPredicted RBP8.63□□□□□ -1.03
VPS39-208ENST00000564994 METTL9Q9H1A3 318 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 IFT22Q9H7X7 185 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 PSG11Q9UQ72 335 aa8.63□□□□□ -1.03
VPS39-208ENST00000564994 TRBV5-7A0A0A0MS05 114 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 PNMA8CA0A1B0GUJ8 204 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 A0A1W2PPI3 338 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 A0A1W2PPK0 400 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 OOSP1A8MZH6 123 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 XPNPEP2O43895 674 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 GNG10P50151 68 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 CD83Q01151 205 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 Q499Y3 187 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 YIF1BQ5BJH7 314 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 FAM53AQ6NSI3 398 aaPredicted RBP8.62□□□□□ -1.03
VPS39-208ENST00000564994 C10orf99Q6UWK7 81 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 FBLIM1Q8WUP2 373 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 CAPSLQ8WWF8 208 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 R3HDM4Q96D70 268 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 CYYR1Q96J86 154 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 AKR1E2Q96JD6 320 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 OR14A2Q96R54 314 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 C8orf4Q9NR00 106 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.62□□□□□ -1.03
VPS39-208ENST00000564994 HSPE1-MOB4S4R3N1 261 aa8.62□□□□□ -1.03
VPS39-208ENST00000564994 A0A1W2PPE3 182 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 A0A1W2PRX2 142 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 C15orf65H3BRN8 121 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 H3BUI4 141 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 PIN1P1O15428 100 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 PRB2P02812 416 aaPredicted RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 CSTBP04080 98 aaKnown RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 SNRNP70P08621 437 aaKnown RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 FSTP19883 344 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 CAPGP40121 348 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 MNDAP41218 407 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 ARHGDIBP52566 201 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 MPV17LQ2QL34 196 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 SLC22A6Q4U2R8 563 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OXLD1Q5BKU9 147 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OGFRL1Q5TC84 451 aaPredicted RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 CCDC144NLQ6NUI1 221 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 LYPD6Q86Y78 171 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 DRAM1Q8N682 238 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OR4F17Q8NGA8 305 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OR10A7Q8NGE5 316 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OR56B4Q8NH76 319 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 UBALD1Q8TB05 177 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 TOMM40LQ969M1 308 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 MUL1Q969V5 352 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms