RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 MAGEB3O15480 346 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 LALBAP00709 142 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 MNDAP41218 407 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 MRPL28Q13084 256 aaKnown RBP13.17□□□□□ -0.3
PTPRK-208ENST00000392449 IL13RA2Q14627 380 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 KLHL22Q53GT1 634 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 ZNF565Q8N9K5 539 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 SUMF2Q8NBJ7 301 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 TMEM106AQ96A25 262 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 CREB3L1Q96BA8 519 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 MYCBPQ99417 103 aaPredicted RBP13.17□□□□□ -0.3
PTPRK-208ENST00000392449 FGF20Q9NP95 211 aaPredicted RBP13.17□□□□□ -0.3
PTPRK-208ENST00000392449 ING4Q9UNL4 249 aa13.17□□□□□ -0.3
PTPRK-208ENST00000392449 A0A1W2PP11 408 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 BAG2O95816 211 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 HNF4GQ14541 408 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 DDI2Q5TDH0 399 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 CCDC144NLQ6NUI1 221 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 REC114Q7Z4M0 266 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 ZNF329Q86UD4 541 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 GPR148Q8TDV2 347 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 RBMXL1Q96E39 390 aaKnown RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 DPCDQ9BVM2 203 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 BARHL1Q9BZE3 327 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 CLEC2DQ9UHP7 191 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 ST3GAL6Q9Y274 331 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 MOB4Q9Y3A3 225 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 TSSC4Q9Y5U2 329 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 HSPE1-MOB4S4R3N1 261 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A18PA6NE21 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A16PA6NEW6 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A20PA6NIJ5 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A9PA6NNJ1 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A12PA8MX19 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A5PA8MXJ8 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 NPIPB11E5RHQ5 1161 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 GEMIN2O14893 280 aaKnown RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 OR7C1O76099 320 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 PF4P02776 101 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A15PP0C7V4 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A13PP0C7W8 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A14PP0C7W9 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM90A24PP0C7X0 464 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 FAM106CPP0CH98 169 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 SERPINA2P20848 420 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 C21orf33P30042 268 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 HES1Q14469 280 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 RPL22L1Q6P5R6 122 aaKnown RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 ASCL4Q6XD76 172 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 ZFP41Q8N8Y5 198 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 WFDC9Q8NEX5 89 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 Q8NFD4 153 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 OR4X2Q8NGF9 303 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 CYYR1Q96J86 154 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 NOL4LQ96MY1 436 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 LINC00574Q9H8X3 128 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 SMPD3Q9NY59 655 aaPredicted RBP13.16□□□□□ -0.3
PTPRK-208ENST00000392449 LINC00527Q9UJ94 153 aa13.16□□□□□ -0.3
PTPRK-208ENST00000392449 OOSP1A8MZH6 123 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 CD2P06729 351 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 ZNF93P35789 620 aaPredicted RBP13.15□□□□□ -0.3
PTPRK-208ENST00000392449 REG1BP48304 166 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 RBM11P57052 281 aaKnown RBP13.15□□□□□ -0.3
PTPRK-208ENST00000392449 LOXL3P58215 753 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 MADCAM1Q13477 382 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 LRRC36Q1X8D7 754 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 ZNF555Q8NEP9 628 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 CCDC107Q8WV48 283 aa13.15□□□□□ -0.3
PTPRK-208ENST00000392449 CPNE2Q96FN4 548 aaPredicted RBP13.15□□□□□ -0.3
PTPRK-208ENST00000392449 AMMECR1Q9Y4X0 333 aaPredicted RBP13.15□□□□□ -0.3
PTPRK-208ENST00000392449 IGHV3-72A0A0B4J1Y9 119 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 MPIG6BO95866 241 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 IGKV1D-33P01593 117 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 IGKV1-33P01594 117 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 TMEM11P17152 192 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 PPP3R1P63098 170 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 CCDC58Q4VC31 144 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 C18orf65Q6ZTR6 163 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 OSR2Q8N2R0 312 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 C5orf56Q8N8D9 126 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 OR52N1Q8NH53 320 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 METTL9Q9H1A3 318 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 NCOR1P1Q9H4R4 102 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 TMEM138Q9NPI0 162 aa13.14□□□□□ -0.31
PTPRK-208ENST00000392449 TRAV8-7A0A075B6U6 113 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 IGHV3-43A0A0B4J1X8 118 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 PSMB11A5LHX3 300 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 IGHV3-43DP0DP04 118 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 DCKP27707 260 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 BDKRB2P30411 391 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 PAX5Q02548 391 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 SLC22A6Q4U2R8 563 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 ATAD3CQ5T2N8 411 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 TMPRSS11AQ6ZMR5 421 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 OR10X1Q8NGY0 326 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 CYGBQ8WWM9 190 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 GHSRQ92847 366 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 SMIM19Q96E16 107 aa13.13□□□□□ -0.31
PTPRK-208ENST00000392449 ZNF184Q99676 751 aaPredicted RBP13.13□□□□□ -0.31
PTPRK-208ENST00000392449 IL36GQ9NZH8 169 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms