RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TMED6Q8WW62 240 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 HPSE2Q8WWQ2 592 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 MARC2Q969Z3 335 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 POM121L2Q96KW2 1035 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 HIST1H2AAQ96QV6 131 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SYT3Q9BQG1 590 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SLC5A7Q9GZV3 580 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 OR2S2Q9NQN1 319 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SLC2A9Q9NRM0 540 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 GLRX2Q9NS18 164 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 CRIM1Q9NZV1 1036 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 ZNF732B4DXR9 585 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 CGAP01215 116 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 APOC3P02656 99 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 COL8A1P27658 744 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 BOLLQ8N9W6 283 aaKnown RBP13.24□□□□□ -0.29
CCDC40-202ENST00000374876 ZNF610Q8N9Z0 462 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 SPERTQ8NA61 448 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 OR5T2Q8NGG2 359 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 MOB3AQ96BX8 217 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 GALNT14Q96FL9 552 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 NARS2Q96I59 477 aaKnown RBP13.24□□□□□ -0.29
CCDC40-202ENST00000374876 SUCNR1Q9BXA5 334 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 FGF23Q9GZV9 251 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-202ENST00000374876 MS4A7Q9GZW8 240 aaPredicted RBP13.24□□□□□ -0.29
CCDC40-202ENST00000374876 OPA3Q9H6K4 179 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 PRSS50Q9UI38 385 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 FREM1Q5H8C1 2179 aa13.24□□□□□ -0.29
CCDC40-202ENST00000374876 PRSS44E7EML9 344 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TRAPPC2LH3BP13 241 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 K7EPK0 472 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TAAR5O14804 337 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 APLNRP35414 380 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 UCP3P55916 312 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 FGF12P61328 243 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 EIF5AP63241 154 aaKnown RBP13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TMEM187Q14656 261 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 DAZAP2Q15038 168 aaPredicted RBP13.23□□□□□ -0.29
CCDC40-202ENST00000374876 Q6ZPA2 131 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 MKXQ8IYA7 352 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 FAM71E2Q8N5Q1 922 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 BPIFCQ8NFQ6 507 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 OR5L1Q8NGL2 311 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TMEM100Q9NV29 134 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 PROCRQ9UNN8 238 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 DEDDO75618 318 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 SCGB1D2O95969 90 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 HKR1P10072 659 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 AADACP22760 399 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 RPL12P30050 165 aaKnown RBP13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TFF3Q07654 80 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 HIKESHIQ53FT3 197 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 UQCC3Q6UW78 93 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 TFAP2EQ6VUC0 442 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 CCDC71LQ8N9Z2 235 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 OR5A2Q8NGI9 324 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 PLSCR4Q9NRQ2 329 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 JKAMPQ9P055 326 aa13.23□□□□□ -0.29
CCDC40-202ENST00000374876 LSM5Q9Y4Y9 91 aaKnown RBP13.23□□□□□ -0.29
CCDC40-202ENST00000374876 RAB19A4D1S5 217 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 ANKRD30BLA7E2S9 258 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 CD300LBA8K4G0 201 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 A8MXE2 369 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 TPD52L2O43399 206 aaKnown RBP13.22□□□□□ -0.29
CCDC40-202ENST00000374876 HIST2H2BCQ6DN03 193 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 ZNF474Q6S9Z5 364 aaPredicted RBP13.22□□□□□ -0.29
CCDC40-202ENST00000374876 LIAT1Q6ZQX7 453 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 DPPA2Q7Z7J5 298 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 MTCH1Q9NZJ7 389 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 ADGRG4Q8IZF6 3080 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 PPYP01298 95 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 IGSF11Q5DX21 431 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 FBXW9Q5XUX1 488 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 EIF5AL1Q6IS14 154 aaKnown RBP13.22□□□□□ -0.29
CCDC40-202ENST00000374876 LRTM2Q8N967 370 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 OR1K1Q8NGR3 316 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 NANOS1Q8WY41 292 aaKnown RBP13.22□□□□□ -0.29
CCDC40-202ENST00000374876 ARL11Q969Q4 196 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 RSRP1Q9BUV0 290 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 GP6Q9HCN6 339 aa13.22□□□□□ -0.29
CCDC40-202ENST00000374876 HCFC1P51610 2035 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 ZNF705EA8MWA4 302 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-202ENST00000374876 TSPAN4O14817 238 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 DEFA5Q01523 94 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 TAGLNQ01995 201 aaKnown RBP13.21□□□□□ -0.29
CCDC40-202ENST00000374876 MPV17LQ2QL34 196 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 RPL7L1Q6DKI1 246 aaKnown RBP13.21□□□□□ -0.29
CCDC40-202ENST00000374876 LYZL2Q7Z4W2 148 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 LGI3Q8N145 548 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 OR11L1Q8NGX0 322 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 NEK7Q8TDX7 302 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 OR51B6Q9H340 312 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 TAF9BQ9HBM6 251 aa13.21□□□□□ -0.29
CCDC40-202ENST00000374876 FBXO9Q9UK97 447 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-202ENST00000374876 KLF2Q9Y5W3 355 aaPredicted RBP13.21□□□□□ -0.29
CCDC40-202ENST00000374876 LOC105371267A0A1B0GV96 52 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 PHF1O43189 567 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-202ENST00000374876 ASCL1P50553 236 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 FAM27E3Q08E93 113 aa13.2□□□□□ -0.3
CCDC40-202ENST00000374876 SP5Q6BEB4 398 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms