RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RTN4IP1Q8WWV3 396 aaPredicted RBP1.45□□□□□ -2.18
CD44-239ENST00000639002 OR5P2Q8WZ92 322 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 PTH2Q96A98 100 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 DDIT4LQ96D03 193 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 SGTBQ96EQ0 304 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 SMIM12Q96EX1 92 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 WDR34Q96EX3 536 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 MRAP2Q96G30 205 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 KCTD7Q96MP8 289 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 RNF145Q96MT1 663 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 TMEM56Q96MV1 263 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 RDH12Q96NR8 316 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 TEAD3Q99594 435 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 PITX2Q99697 317 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 EBNA1BP2Q99848 306 aaKnown RBP1.45□□□□□ -2.18
CD44-239ENST00000639002 GABRG3Q99928 467 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 DHRS9Q9BPW9 319 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 TMEM208Q9BTX3 173 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 NUDT9Q9BW91 350 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 UGT2B28Q9BY64 529 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 CHRNA10Q9GZZ6 450 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 TMEM27Q9HBJ8 222 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 MRPL40Q9NQ50 206 aaKnown RBP1.45□□□□□ -2.18
CD44-239ENST00000639002 FBXO8Q9NRD0 319 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 ANXA10Q9UJ72 324 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 HES2Q9Y543 173 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 ABCC11Q96J66 1382 aa1.45□□□□□ -2.18
CD44-239ENST00000639002 NPHP4O75161 1426 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 IGHV3OR16-9A0A0B4J2B5 98 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 IGHV1OR15-9A0A0B4J2B8 117 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CENPVL3A0A0U1RRI6 287 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 A0A1W2PNN7 141 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 GOLGA6L4A6NEF3 574 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 F5H768 121 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 H3BQV1 296 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 I3L4J1 428 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 K7EMT4 169 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CDIPTO14735 213 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PHYHO14832 338 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 BIRC5O15392 142 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TGOLN2O43493 480 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 SYNGR1O43759 233 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 GCM2O75603 506 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 REM1O75628 298 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 GATBO75879 557 aaKnown RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 BRI3O95415 125 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CD8AP01732 235 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TYMSP04818 313 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CTSLP07711 333 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 MMP7P09237 267 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 PGA4P0DJD7 388 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PGA3P0DJD8 388 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 C8orf88P0DMB2 117 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ZNF35P13682 527 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CD99P14209 185 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 AKR1C4P17516 323 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ATF6P18850 670 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 MYL12AP19105 171 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PRPS1L1P21108 318 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PSMB5P28074 263 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 IDH3GP51553 393 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 UBE2E1P51965 193 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 SYNJ2BPP57105 145 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 OR4D2P58180 307 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TAS2R46P59540 309 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ARPC4P59998 168 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ACTBP60709 375 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 ACTG1P63261 375 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CRADDP78560 199 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CCL7P80098 99 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 AESQ08117 197 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 PPIDQ08752 370 aaKnown RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 SRSF6Q13247 344 aaKnown RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 GUK1Q16774 197 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TBC1D28Q2M2D7 210 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CEACAM21Q3KPI0 293 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 TMEM176BQ3YBM2 270 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 SPIN4Q56A73 249 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 HHATQ5VTY9 493 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CST9Q5W186 159 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 DNM1P34Q6PK57 102 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 FAM131AQ6UXB0 335 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 UNQ9165/PRO28630Q6UXU0 137 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 BLIDQ8IZY5 108 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 STK40Q8N2I9 435 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 OR10W1Q8NGF6 305 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 OR5AR1Q8NGP9 310 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 OR10G6Q8NH81 332 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 STOML3Q8TAV4 291 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 C16orf78Q8WTQ4 265 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CASTOR1Q8WTX7 329 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 DYDC1Q8WWB3 177 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 CYGBQ8WWM9 190 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 RAB8BQ92930 207 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 HGDQ93099 445 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 RERGQ96A58 199 aaPredicted RBP1.44□□□□□ -2.18
CD44-239ENST00000639002 HAUS1Q96CS2 278 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 SMIM19Q96E16 107 aa1.44□□□□□ -2.18
CD44-239ENST00000639002 YIPF6Q96EC8 236 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms