RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PSG11Q9UQ72 335 aa6.79□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A18PA6NE21 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A16PA6NEW6 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A20PA6NIJ5 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A9PA6NNJ1 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A12PA8MX19 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A5PA8MXJ8 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 ZNF736B4DX44 427 aaPredicted RBP6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 J3QR06 171 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 CYB5AP00167 134 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A15PP0C7V4 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A13PP0C7W8 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A14PP0C7W9 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FAM90A24PP0C7X0 464 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 NHLRC4P0CG21 123 aaPredicted RBP6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 ZNF20P17024 532 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 CALB2P22676 271 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 SSTR5P35346 364 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 ARHGDIBP52566 201 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 PRRX1P54821 245 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FLOT2Q14254 428 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 ZSCAN26Q16670 478 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 SPIN3Q5JUX0 258 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 UNQ9370/PRO34162Q6UXP9 181 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 OVCH2Q7RTZ1 564 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 AMIGO2Q86SJ2 522 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 Q8IYB0 196 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 STPG2Q8N412 459 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 OR10K1Q8NGX5 313 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 OR2G2Q8NGZ5 317 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 OR9G1Q8NH87 305 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 PLPPR1Q8TBJ4 325 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 MRGPRDQ8TDS7 321 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 CHPT1Q8WUD6 406 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 ITFG2Q969R8 447 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 UTP4Q969X6 686 aaKnown RBP6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 CYYR1Q96J86 154 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 HRASLS5Q96KN8 279 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 DCLRE1BQ9H816 532 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 TAS2R3Q9NYW6 316 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 CALYQ9NYX4 217 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 FRRS1LQ9P0K9 344 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 AASSQ9UDR5 926 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 GLS2Q9UI32 602 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 SCOCQ9UIL1 159 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 MYRFQ9Y2G1 1151 aa6.78□□□□□ -1.32
SHKBP1-220ENST00000599716 MEIKINA0A087WXM9 373 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 A0A087X0M5 115 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 TRAV24A0A0B4J272 114 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 KBTBD11-OT1A0A1B0GTJ5 212 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 A0A1B0GX30 115 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 TCRBV3S1A0A5B6 114 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 NCBP2LA6PVI3 153 aaKnown RBP6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 SEC14L6B5MCN3 397 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 H0YJX3 145 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 M0QZK8 103 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 DEGS1O15121 323 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 KDM4BO94953 1096 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 LY86O95711 162 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 OR2T7P0C7T2 308 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 OCM2P0CE71 109 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 OCMP0CE72 109 aaPredicted RBP6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 CGB3P0DN86 165 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 CGB7P0DN87 165 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 CDC42P60953 191 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 CCDC144NLQ6NUI1 221 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 LHFPL2Q6ZUX7 228 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 MOB3BQ86TA1 216 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 GID4Q8IVV7 300 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 DNAAF1Q8NEP3 725 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 PP6455Q8WZ26 134 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 EME1Q96AY2 570 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 OR5B12Q96R08 314 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 MNTQ99583 582 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 CIB1Q99828 191 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 HSPB9Q9BQS6 159 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 MCRIP2Q9BUT9 160 aaKnown RBP6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 GPR61Q9BZJ8 451 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 COMMD4Q9H0A8 199 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 SORL1Q92673 2214 aa6.77□□□□□ -1.33
SHKBP1-220ENST00000599716 IGHV3-43A0A0B4J1X8 118 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF729A6NN14 1252 aaPredicted RBP6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 IGHG2P01859 326 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 UBCP0CG48 685 aaKnown RBP6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 IGHV3-43DP0DP04 118 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 TMEM225BP0DP42 221 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 PRKACBP22694 351 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 HTR1FP30939 366 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 ATP6V1E1P36543 226 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 GPR12P47775 334 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 ISL1P61371 349 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 MADCAM1Q13477 382 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 PIGYQ3MUY2 71 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 ZNF260Q3ZCT1 412 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 PAN3Q58A45 887 aaKnown RBP6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 LCE2AQ5TA79 106 aaPredicted RBP6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 KDM4DQ6B0I6 523 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 ZFAND6Q6FIF0 208 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 FAM220AQ7Z4H9 259 aa6.76□□□□□ -1.33
SHKBP1-220ENST00000599716 THNSL2Q86YJ6 484 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms