RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PIGPP57054 158 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 PRDX4Q13162 271 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 PDCD1Q15116 288 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 IAH1Q2TAA2 248 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 OR2A2Q6IF42 318 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 VWA1Q6PCB0 445 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 BAP18Q8IXM2 172 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 APOBEC3DQ96AK3 386 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 AQP10Q96PS8 301 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 KCNIP3Q9Y2W7 256 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 DOPEY1Q5JWR5 2465 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 MSGN1A6NI15 193 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 TNFSF13O75888 250 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF205O95201 554 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 CLDN1O95832 211 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 NPBWR2P48146 333 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 FXYD4P59646 89 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 RAB1AP62820 205 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 IL15RAQ13261 267 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 FAM219AQ8IW50 185 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 FOXRED2Q8IWF2 684 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 CCDC36Q8IYA8 594 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 BATF2Q8N1L9 274 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 SLC30A7Q8NEW0 376 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 MARS2Q96GW9 593 aaKnown RBP13.28□□□□□ -0.28
CCDC40-202ENST00000374876 DNAJB11Q9UBS4 358 aa13.28□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF629Q9UEG4 869 aaPredicted RBP13.28□□□□□ -0.28
CCDC40-202ENST00000374876 UTP20O75691 2785 aaKnown RBP13.28□□□□□ -0.28
CCDC40-202ENST00000374876 PQLC2LA1A4F0 135 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF503-AS2A6NEH8 195 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 AGAP20933 346 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 FCGR2CP31995 323 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 PLP2Q04941 152 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 ZDHHC23Q8IYP9 409 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 STARD4Q96DR4 205 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 POM121Q96HA1 1249 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 GMPPAQ96IJ6 420 aaPredicted RBP13.27□□□□□ -0.28
CCDC40-202ENST00000374876 CYTL1Q9NRR1 136 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 ICE1Q9Y2F5 2266 aa13.27□□□□□ -0.28
CCDC40-202ENST00000374876 PMELP40967 661 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 GLP1RP43220 463 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 HAAOP46952 286 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 GPM6AP51674 278 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 FAM214BQ7L5A3 538 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 NUFIP2Q7Z417 695 aaKnown RBP13.27□□□□□ -0.29
CCDC40-202ENST00000374876 STPG2Q8N412 459 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 SLAMF9Q96A28 289 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 PSMG3-AS1Q96PY0 264 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 ZC4H2Q9NQZ6 224 aa13.27□□□□□ -0.29
CCDC40-202ENST00000374876 SPTAN1Q13813 2472 aaKnown RBP13.27□□□□□ -0.29
CCDC40-202ENST00000374876 SMCO1Q147U7 214 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 GUSBP1Q15486 140 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 CEACAM21Q3KPI0 293 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 GGNBP1Q5YKI7 109 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 RTN4IP1Q8WWV3 396 aaPredicted RBP13.26□□□□□ -0.29
CCDC40-202ENST00000374876 SFXN3Q9BWM7 321 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 PIGMQ9H3S5 423 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 C12orf49Q9H741 205 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 NAA60Q9H7X0 242 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 KCNJ16Q9NPI9 418 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 GLS2Q9UI32 602 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 PCDHB10Q9UN67 800 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 STARD10Q9Y365 291 aa13.26□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A10PA6NDY2 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A18PA6NE21 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A16PA6NEW6 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A20PA6NIJ5 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A8PA6NJQ4 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A7PA6NKC0 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A22PA8MWA6 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A12PA8MX19 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A5PA8MXJ8 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A23PA8MXZ1 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SS18L1O75177 396 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-202ENST00000374876 CST4P01036 141 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A15PP0C7V4 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A13PP0C7W8 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A14PP0C7W9 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FAM90A24PP0C7X0 464 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 BCL3P20749 454 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 GRNP28799 593 aaKnown RBP13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SAXO1Q8IYX7 474 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SLC38A6Q8IZM9 456 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 RNF141Q8WVD5 230 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 MRPL24Q96A35 216 aaKnown RBP13.25□□□□□ -0.29
CCDC40-202ENST00000374876 OPN3Q9H1Y3 402 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-202ENST00000374876 USP9YO00507 2555 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-202ENST00000374876 BAHCC1Q9P281 2608 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 C19orf84I3L1E1 186 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 FGF16O43320 207 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 IL18BPO95998 194 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 NGFP01138 241 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 OR5AC1P0C628 307 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 HERV-K104P61576 105 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 BTN1A1Q13410 526 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 SP6Q3SY56 376 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 PHLDA2Q53GA4 152 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 TMEM200AQ86VY9 491 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 Q8NFD4 153 aa13.25□□□□□ -0.29
CCDC40-202ENST00000374876 OR1S2Q8NGQ3 325 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms