RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SSMEM1Q8WWF3 244 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 RTTNQ86VV8 2226 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 IGHV1-45A0A0A0MS14 117 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 A0A1W2PPV9 198 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 CAMPP49913 170 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 VAMP3Q15836 100 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 TMEM251Q8N6I4 163 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 CCL19Q99731 98 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 NAA60Q9H7X0 242 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 MYO16Q9Y6X6 1858 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 SOCS1O15524 211 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 PDPNQ86YL7 162 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF721Q8TF20 911 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 PRDM14Q9GZV8 571 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 MRM2Q9UI43 246 aaKnown RBP13.67□□□□□ -0.22
PTPRF-201ENST00000359947 PILRBQ9UKJ0 227 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 PLPP2O43688 288 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 KRTCAP3Q53RY4 240 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF501Q96CX3 271 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-201ENST00000359947 TRIOBPQ9H2D6 2365 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 RNASEK-C17orf49H0YIS7 233 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SNRPCP09234 159 aaKnown RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 TMEM74BQ9NUR3 256 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SLC23A3Q6PIS1 610 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 MS4A3Q96HJ5 214 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SLC45A2Q9UMX9 530 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 WASHC3Q9Y3C0 194 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 IL11P20809 199 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SUMO1P63165 101 aaKnown RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 C11orf87Q6NUJ2 197 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 RPL30P62888 115 aaKnown RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 A0A1W2PQD3 144 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 PGA3P0DJD8 388 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 UBE2L3P68036 154 aaKnown RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SSBP1Q04837 148 aaKnown RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 GGNBP1Q5YKI7 109 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 VSTM2AQ8TAG5 236 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SP7Q8TDD2 431 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 SH2D2AQ9NP31 389 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 B4E171 279 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 HTR1DP28221 377 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 TSPAN7P41732 249 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 DEGS2Q6QHC5 323 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 NOL4LQ96MY1 436 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-201ENST00000359947 GSX2Q9BZM3 304 aa13.66□□□□□ -0.22
PTPRF-201ENST00000359947 UPK3AO75631 287 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 PF4V1P10720 104 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 SPNP16150 400 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 FAM222BQ8WU58 562 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 DOCK3Q8IZD9 2030 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 FOXS1O43638 330 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 TRAPPC1Q9Y5R8 145 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 TRIM77I1YAP6 450 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 Q8WTZ3 238 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 RAB40CQ96S21 281 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 SLC7A10Q9NS82 523 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 TRAPPC2P0DI81 140 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 TRAPPC2BP0DI82 140 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 RAB32Q13637 225 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF429Q86V71 674 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 OR8D4Q8NGM9 314 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 PRSS3P2Q8NHM4 247 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 ZNFX1Q9P2E3 1918 aaKnown RBP13.65□□□□□ -0.22
PTPRF-201ENST00000359947 A0A1W2PNV4 684 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF737O75373 536 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 POLR2GP62487 172 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRF-201ENST00000359947 INPP5JQ15735 1006 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-201ENST00000359947 DPH3Q96FX2 82 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 LOXL4Q96JB6 756 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 OR2V2Q96R30 315 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 PIMREGQ9BSJ6 248 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 ZMAT5Q9UDW3 170 aaKnown RBP13.65□□□□□ -0.22
PTPRF-201ENST00000359947 PRSS50Q9UI38 385 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 C9orf170A2RU37 121 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 S100A8P05109 93 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF770Q6IQ21 691 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-201ENST00000359947 OR10G4Q8NGN3 311 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 OR10G9Q8NGN4 311 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 OR10G7Q8NGN6 311 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 FRRS1LQ9P0K9 344 aa13.65□□□□□ -0.22
PTPRF-201ENST00000359947 IGKV3D-15A0A087WSY6 115 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 BCL2L11O43521 198 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 HSBP1O75506 76 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 IGKV3-15P01624 115 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 DYNLT3P51808 116 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 LSM6P62312 80 aaKnown RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 MGAT2Q10469 447 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 CLPPQ16740 277 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 C5orf17Q8NAS9 161 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 NUP37Q8NFH4 326 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 CGB1A6NKQ9 187 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 VDAC1P21796 283 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 PLAURQ03405 335 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 OR4D11Q8NGI4 311 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 CXorf58Q96LI9 332 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 UBR3Q6ZT12 1888 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 GSTZ1O43708 216 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-201ENST00000359947 TBX19O60806 448 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 ADTRPQ96IZ2 230 aa13.64□□□□□ -0.23
PTPRF-201ENST00000359947 NAT8BQ9UHF3 227 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms