RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP11	YKR098C	SDS22	P36047	338 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	SHM2	P37291	469 aa	Known RBP	2.67	□□□□□ -1.98
UBP11	YKR098C	BUD8	P41698	603 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	MNT2	P53059	558 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	NSE5	Q03718	556 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	VPS36	Q06696	566 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	TRM11	Q12463	433 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	RNR1	P21524	888 aa	Known RBP	2.67	□□□□□ -1.98
UBP11	YKR098C	ERG6	P25087	383 aa	Known RBP	2.67	□□□□□ -1.98
UBP11	YKR098C	SSH4	P32343	579 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	LRG1	P35688	1017 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	POL12	P38121	705 aa	Predicted RBP	2.67	□□□□□ -1.98
UBP11	YKR098C	PLB1	P39105	664 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	SWD1	P39706	426 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	BIT61	P47041	543 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	MAD3	P47074	515 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	TAF4	P50105	388 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	TEX1	P53851	422 aa	Known RBP	2.67	□□□□□ -1.98
UBP11	YKR098C	TRS130	Q03660	1102 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	YLR224W	Q05947	369 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	SGO1	Q08490	590 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	DIN7	Q12086	430 aa		2.67	□□□□□ -1.98
UBP11	YKR098C	VAS1	P07806	1104 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	CBP3	P21560	335 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	RPA135	P22138	1203 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	KAR4	P25583	335 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	PRE4	P30657	266 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	MTC7	P32633	139 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	LIP5	P32875	414 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	APT2	P36973	181 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	YHR033W	P38690	423 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	SPC72	P39723	622 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	SSP120	P39931	234 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	VPS27	P40343	622 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	IMA5	P40884	581 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	PXA1	P41909	870 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	NOP9	P47077	666 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	INP52	P50942	1183 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	YNR071C	P53757	342 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	SSP2	Q08646	371 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	TGL5	Q12043	749 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	VPS5	Q92331	675 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	HRP1	Q99383	534 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	RPS13	P05756	151 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	BEM3	P32873	1128 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	TSA1	P34760	196 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	APM3	P38153	483 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	PEF1	P53238	335 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	COX18	P53239	316 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	ERG5	P54781	538 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	NRG1	Q03125	231 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	VBA4	Q04602	768 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	EIS1	Q05050	843 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	MCH5	Q08777	521 aa		2.66	□□□□□ -1.98
UBP11	YKR098C	DBP10	Q12389	995 aa	Known RBP	2.66	□□□□□ -1.98
UBP11	YKR098C	ERG20	P08524	352 aa	Known RBP	2.65	□□□□□ -1.99
UBP11	YKR098C	GFA1	P14742	717 aa	Known RBP	2.65	□□□□□ -1.99
UBP11	YKR098C	TAF5	P38129	798 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	CDS1	P38221	457 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	ERP2	P39704	215 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	GET2	P40056	285 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	SPT20	P50875	604 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	GTR1	Q00582	310 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	PPN1	Q04119	674 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	BLS1	Q06071	122 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	COG4	Q06096	861 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	ECM3	Q99252	613 aa		2.65	□□□□□ -1.99
UBP11	YKR098C	CWH43	P25618	953 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	LST4	P34239	828 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	RMA1	P36001	430 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	PSY4	P38193	441 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	LYS9	P38999	446 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	STT3	P39007	718 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	PRM2	P40534	656 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	TAF1	P46677	1066 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	ECL1	P48235	211 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	CPR6	P53691	371 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	GAD1	Q04792	585 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	POM34	Q12445	299 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	LAS17	Q12446	633 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	HMG2	P12684	1045 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	NCP1	P16603	691 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	ARG1	P22768	420 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	MCM3	P24279	971 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	PRP22	P24384	1145 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	CAD1	P24813	409 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	KIN82	P25341	720 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	OMA1	P36163	345 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	YLF2	P38746	405 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	BAP3	P41815	604 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	LSB3	P43603	459 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	IML2	P47031	731 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	YDL183C	P48569	320 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	MTL1	P53214	551 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	ARC35	P53731	342 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	CTK1	Q03957	528 aa	Known RBP	2.64	□□□□□ -1.99
UBP11	YKR098C	TRI1	Q05024	226 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	ATG11	Q12527	1178 aa		2.64	□□□□□ -1.99
UBP11	YKR098C	SOD2	P00447	233 aa		2.63	□□□□□ -1.99
UBP11	YKR098C	URA3	P03962	267 aa		2.63	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 50.9 ms