RNA–Protein interactions for RNA: YGL248W

PDE1, Transcript of Low-affinity cyclic AMP phosphodiesterase, yeast

Gene PDE1, Length 1,110 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDE1	YGL248W	ELM1	P32801	640 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	VPS17	P32913	551 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	RER2	P35196	286 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	CCZ1	P38273	704 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	STL1	P39932	569 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	YIL161W	P40449	235 aa	Known RBP	5.69	□□□□□ -1.5
PDE1	YGL248W	EPL1	P43572	832 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	UBP6	P43593	499 aa	Known RBP	5.69	□□□□□ -1.5
PDE1	YGL248W	GNP1	P48813	663 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	NUT1	P53114	1132 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	GIM3	P53900	129 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	PNG1	Q02890	363 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	SNZ1	Q03148	297 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	RMT2	Q03305	412 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	SKY1	Q03656	742 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	KCS1	Q12494	1050 aa		5.69	□□□□□ -1.5
PDE1	YGL248W	TOP3	P13099	656 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	CBP3	P21560	335 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	CBF2	P32504	956 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	RMA1	P36001	430 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	SHM2	P37291	469 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	ECM2	P38241	364 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	HSL7	P38274	827 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	MTG2	P38860	518 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	UTP9	P38882	575 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	RTS1	P38903	757 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	IMA5	P40884	581 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	SKP2	P42843	763 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	AIP1	P46680	615 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	CCM1	P48237	864 aa	Predicted RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	YGR250C	P53316	781 aa	Known RBP	5.68	□□□□□ -1.5
PDE1	YGL248W	EOS1	P53938	366 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	YDR131C	Q03899	556 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	GLO4	Q12320	285 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	FRE6	Q12473	712 aa		5.68	□□□□□ -1.5
PDE1	YGL248W	BI4	P03879	638 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
PDE1	YGL248W	MIS1	P09440	975 aa	Known RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	CDC16	P09798	840 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	HVG1	P0CE11	249 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	LAT1	P12695	482 aa	Known RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	ENA1	P13587	1091 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	GRR1	P24814	1151 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	STE50	P25344	346 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	SED4	P25365	1065 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	PYC2	P32327	1180 aa	Known RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	ERG3	P32353	365 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	NGG1	P32494	702 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	MRP4	P32902	394 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	SQT1	P35184	431 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	SWH1	P35845	1188 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	LAS1	P36146	502 aa	Predicted RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	YBR225W	P38321	900 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	BUD16	P39988	312 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	YJL070C	P40361	888 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	DPH1	P40487	425 aa	Known RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	FET4	P40988	552 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	ALG2	P43636	503 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	LSB1	P53281	241 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	DSL1	P53847	754 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	JJJ1	P53863	590 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	CBK1	P53894	756 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	ENA2	Q01896	1091 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	MFB1	Q04922	465 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	ARP7	Q12406	477 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	RVB2	Q12464	471 aa	Known RBP	5.67	□□□□□ -1.5
PDE1	YGL248W	ENA5	Q12691	1091 aa		5.67	□□□□□ -1.5
PDE1	YGL248W	LEU2	P04173	364 aa	Predicted RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	INO1	P11986	533 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	THR1	P17423	357 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	MLS1	P30952	554 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	HBS1	P32769	611 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	LOT5	P34234	306 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	TEF4	P36008	412 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	ARL1	P38116	183 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	RIM11	P38615	370 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	DED81	P38707	554 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	YMR124W	P39523	943 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	SWD1	P39706	426 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	RVS167	P39743	482 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	ALD5	P40047	520 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	UTP18	P40362	594 aa	Predicted RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	PXA1	P41909	870 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	MON1	P53129	644 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	EFM5	P53200	248 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	UTP22	P53254	1237 aa	Predicted RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	SDH1	Q00711	640 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	MRPL13	Q02204	264 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	GGA1	Q06336	557 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	PMT7	Q06644	662 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	CSR1	Q06705	408 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	KEL3	Q08979	651 aa	Predicted RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	HMI1	Q12039	706 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	YPR027C	Q12079	277 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	PDH1	Q12428	516 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	SKS1	Q12505	502 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	SEC39	Q12745	709 aa		5.66	□□□□□ -1.5
PDE1	YGL248W	PGA3	Q12746	312 aa	Known RBP	5.66	□□□□□ -1.5
PDE1	YGL248W	NUC1	P08466	329 aa		5.65	□□□□□ -1.5
PDE1	YGL248W	HOP1	P20050	605 aa		5.65	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 55.8 ms