RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	MDM38	Q08179	573 aa		11.31	□□□□□ -0.6
VPS60	YDR486C	UBR2	Q07963	1872 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	PUT4	P15380	627 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	CAP1	P28495	268 aa	Known RBP	11.3	□□□□□ -0.6
VPS60	YDR486C	PEX2	P32800	271 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	GCS1	P35197	352 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	PMC1	P38929	1173 aa	Predicted RBP	11.3	□□□□□ -0.6
VPS60	YDR486C	MAD1	P40957	749 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	PFD1	P46988	109 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	PRP31	P49704	494 aa	Predicted RBP	11.3	□□□□□ -0.6
VPS60	YDR486C	SXM1	Q04175	944 aa	Known RBP	11.3	□□□□□ -0.6
VPS60	YDR486C	URH1	Q04179	340 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	AIM39	Q08223	395 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	GPM2	Q12008	311 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	ZRT2	Q12436	422 aa		11.3	□□□□□ -0.6
VPS60	YDR486C	SEC1	P30619	724 aa	Known RBP	11.29	□□□□□ -0.6
VPS60	YDR486C	TKL2	P33315	681 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	PCM1	P38628	557 aa	Known RBP	11.29	□□□□□ -0.6
VPS60	YDR486C	MSC7	P38694	644 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	APM2	P38700	605 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	RPC17	P47076	161 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	NUT1	P53114	1132 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	NOG2	P53742	486 aa	Known RBP	11.29	□□□□□ -0.6
VPS60	YDR486C	VTI1	Q04338	217 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	UFO1	Q04511	668 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	IVY1	Q04934	453 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	ECI1	Q05871	280 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	RMP1	Q12530	201 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	APM4	Q99186	491 aa		11.29	□□□□□ -0.6
VPS60	YDR486C	TRX1	P22217	103 aa	Known RBP	11.28	□□□□□ -0.6
VPS60	YDR486C	SRB2	P34162	210 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	MET13	P53128	600 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	RIM8	P53179	542 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	YML083C	Q04526	418 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	PRM6	Q04705	352 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	MRI1	Q06489	411 aa	Known RBP	11.28	□□□□□ -0.6
VPS60	YDR486C	ATG23	Q06671	453 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	11.28	□□□□□ -0.6	not detected
VPS60	YDR486C	TAF10	Q12030	206 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	AIM41	Q12032	185 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	YRR1	Q12172	810 aa		11.28	□□□□□ -0.6
VPS60	YDR486C	ATP1	P07251	545 aa	Known RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	VPH1	P32563	840 aa	Known RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	PEP7	P32609	515 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	GCG1	P32656	232 aa	Known RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	RRP1	P35178	278 aa	Predicted RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	SWC5	P38326	303 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	END3	P39013	349 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	CCT4	P39078	528 aa	Known RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	ADA2	Q02336	434 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	TAF9	Q05027	157 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	RCL1	Q08096	367 aa	Predicted RBP	11.27	□□□□□ -0.61
VPS60	YDR486C	YLR422W	Q06409	1932 aa		11.27	□□□□□ -0.61
VPS60	YDR486C	KGD2	P19262	463 aa	Predicted RBP	11.26	□□□□□ -0.61
VPS60	YDR486C	SFL1	P20134	766 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	AEP2	P22136	580 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	CNS1	P33313	385 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	YBR056W	P38081	501 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	RAD55	P38953	406 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	TGL3	P40308	642 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	KHA1	P40309	873 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	INP52	P50942	1183 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	YPL062W	Q02781	134 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	ELP3	Q02908	557 aa	Known RBP	11.26	□□□□□ -0.61
VPS60	YDR486C	YMR187C	Q03236	431 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	TDA9	Q04545	1251 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	DDC1	Q08949	612 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	HRT3	Q12347	344 aa		11.26	□□□□□ -0.61
VPS60	YDR486C	PDR1	P12383	1068 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	PMS1	P14242	873 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	RPO26	P20435	155 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	SIF2	P38262	535 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	HSL7	P38274	827 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	AVT2	P39981	480 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	FMP10	P40098	244 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	YIL054W	P40524	105 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	MCM6	P53091	1017 aa	Known RBP	11.25	□□□□□ -0.61
VPS60	YDR486C	MTG1	Q03151	367 aa	Predicted RBP	11.25	□□□□□ -0.61
VPS60	YDR486C	LEA1	Q08963	238 aa	Predicted RBP	11.25	□□□□□ -0.61
VPS60	YDR486C	NBP2	Q12163	236 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	AHC1	Q12433	566 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	VPS5	Q92331	675 aa		11.25	□□□□□ -0.61
VPS60	YDR486C	RAD10	P06838	210 aa		11.24	□□□□□ -0.61
VPS60	YDR486C	MMS21	P38632	267 aa		11.24	□□□□□ -0.61
VPS60	YDR486C	FAF1	P40546	346 aa	Predicted RBP	11.24	□□□□□ -0.61
VPS60	YDR486C	TAF1	P46677	1066 aa		11.24	□□□□□ -0.61
VPS60	YDR486C	CDC55	Q00362	526 aa		11.24	□□□□□ -0.61
VPS60	YDR486C	KAP95	Q06142	861 aa	Known RBP	11.24	□□□□□ -0.61
VPS60	YDR486C	TUB3	P09734	445 aa	Known RBP	11.23	□□□□□ -0.61
VPS60	YDR486C	MET4	P32389	672 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	PCA1	P38360	1216 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	SAK1	P38990	1142 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	LYS9	P38999	446 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	YIR016W	P40572	265 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	CDC1	P40986	491 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	YNL040W	P53960	456 aa	Predicted RBP	11.23	□□□□□ -0.61
VPS60	YDR486C	HEH2	Q03281	663 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	THI20	Q08224	551 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	APC5	Q08683	685 aa		11.23	□□□□□ -0.61
VPS60	YDR486C	CIR2	Q08822	631 aa		11.23	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms