RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 HNRNPUQ00839 825 aaKnown RBP eCLIP31.56■■■□□ 2.648e-7■□□□□ 10.9
VEGFA-230ENST00000640482 TNS4Q8IZW8 715 aa31.56■■■□□ 2.64
VEGFA-230ENST00000640482 KLHDC4Q8TBB5 520 aa31.56■■■□□ 2.64
VEGFA-230ENST00000640482 PRDM10Q9NQV6 1147 aa31.56■■■□□ 2.64
VEGFA-230ENST00000640482 RGMBQ6NW40 437 aa31.55■■■□□ 2.64
VEGFA-230ENST00000640482 TDRD7Q8NHU6 1098 aaKnown RBP31.55■■■□□ 2.64
VEGFA-230ENST00000640482 FAM84BQ96KN1 310 aaPredicted RBP31.55■■■□□ 2.64
VEGFA-230ENST00000640482 PDE8BO95263 885 aa31.54■■■□□ 2.64
VEGFA-230ENST00000640482 NOGQ13253 232 aa31.54■■■□□ 2.64
VEGFA-230ENST00000640482 DLGAP5Q15398 846 aa31.54■■■□□ 2.64
VEGFA-230ENST00000640482 VPS37DQ86XT2 251 aa31.54■■■□□ 2.64
VEGFA-230ENST00000640482 FAM205AQ6ZU69 1335 aa31.53■■■□□ 2.64
VEGFA-230ENST00000640482 FKBP1BP68106 108 aa31.53■■■□□ 2.64
VEGFA-230ENST00000640482 APOBEC3FQ8IUX4 373 aaKnown RBP31.53■■■□□ 2.64
VEGFA-230ENST00000640482 VGLL2Q8N8G2 317 aa31.53■■■□□ 2.64
VEGFA-230ENST00000640482 ZBED3Q96IU2 234 aaPredicted RBP31.53■■■□□ 2.64
VEGFA-230ENST00000640482 SCAF8Q9UPN6 1271 aaKnown RBP31.53■■■□□ 2.64
VEGFA-230ENST00000640482 JAG2Q9Y219 1238 aa31.53■■■□□ 2.64
VEGFA-230ENST00000640482 F8W031 263 aaPredicted RBP31.52■■■□□ 2.64
VEGFA-230ENST00000640482 IPO8O15397 1037 aaKnown RBP31.52■■■□□ 2.64
VEGFA-230ENST00000640482 RFX5P48382 616 aaPredicted RBP31.52■■■□□ 2.64
VEGFA-230ENST00000640482 CAVIN4Q5BKX8 364 aa31.52■■■□□ 2.64
VEGFA-230ENST00000640482 MTMR14Q8NCE2 650 aa31.52■■■□□ 2.64
VEGFA-230ENST00000640482 CCDC102AQ96A19 550 aa31.51■■■□□ 2.63
VEGFA-230ENST00000640482 EYA2O00167 538 aa31.5■■■□□ 2.63
VEGFA-230ENST00000640482 HSPA8P11142 646 aaKnown RBP31.5■■■□□ 2.63
VEGFA-230ENST00000640482 ZNF157P51786 506 aaPredicted RBP31.5■■■□□ 2.63
VEGFA-230ENST00000640482 LBX1P52954 281 aa31.5■■■□□ 2.63
VEGFA-230ENST00000640482 PTPN12Q05209 780 aaKnown RBP31.5■■■□□ 2.63
VEGFA-230ENST00000640482 INTS3Q68E01 1043 aaKnown RBP31.5■■■□□ 2.63
VEGFA-230ENST00000640482 FBXO33Q7Z6M2 555 aa31.5■■■□□ 2.63
VEGFA-230ENST00000640482 PUM3Q15397 648 aaKnown RBP31.49■■■□□ 2.63
VEGFA-230ENST00000640482 MFSD14BQ5SR56 506 aa31.49■■■□□ 2.63
VEGFA-230ENST00000640482 LRRFIP2Q9Y608 721 aaKnown RBP31.49■■■□□ 2.63
VEGFA-230ENST00000640482 PAPPA2Q9BXP8 1791 aa31.48■■■□□ 2.63
VEGFA-230ENST00000640482 IFIT1P09914 478 aaKnown RBP31.48■■■□□ 2.63
VEGFA-230ENST00000640482 NF2P35240 595 aa31.48■■■□□ 2.63
VEGFA-230ENST00000640482 CFAP100Q494V2 611 aa31.48■■■□□ 2.63
VEGFA-230ENST00000640482 MEIS3Q99687 375 aa31.48■■■□□ 2.63
VEGFA-230ENST00000640482 FBXO3Q9UK99 471 aa31.48■■■□□ 2.63
VEGFA-230ENST00000640482 CA12O43570 354 aa31.47■■■□□ 2.63
VEGFA-230ENST00000640482 MYO1BO43795 1136 aa31.47■■■□□ 2.63
VEGFA-230ENST00000640482 PRAMEF18Q5VWM3 479 aa31.47■■■□□ 2.63
VEGFA-230ENST00000640482 FAM155AB1AL88 458 aaPredicted RBP31.46■■■□□ 2.63
VEGFA-230ENST00000640482 FRAT2O75474 233 aaPredicted RBP31.46■■■□□ 2.63
VEGFA-230ENST00000640482 GNAI3P08754 354 aa31.46■■■□□ 2.63
VEGFA-230ENST00000640482 FRAT1Q92837 279 aaPredicted RBP31.46■■■□□ 2.63
VEGFA-230ENST00000640482 SPDYE2BA6NHP3 402 aa31.45■■■□□ 2.63
VEGFA-230ENST00000640482 BCAR3O75815 825 aa31.45■■■□□ 2.63
VEGFA-230ENST00000640482 SPDYE6P0CI01 402 aa31.45■■■□□ 2.63
VEGFA-230ENST00000640482 RBM5P52756 815 aaKnown RBP eCLIP31.45■■■□□ 2.631e-9■□□□□ 9.1
VEGFA-230ENST00000640482 ATF7IPQ6VMQ6 1270 aa31.45■■■□□ 2.63
VEGFA-230ENST00000640482 COL1A1P02452 1464 aaPredicted RBP31.45■■■□□ 2.62
VEGFA-230ENST00000640482 CIAO1O76071 339 aa31.44■■■□□ 2.62
VEGFA-230ENST00000640482 TRIM27P14373 513 aa31.44■■■□□ 2.62
VEGFA-230ENST00000640482 FGFR2P21802 821 aa31.44■■■□□ 2.62
VEGFA-230ENST00000640482 TTF2Q9UNY4 1162 aaKnown RBP31.44■■■□□ 2.62
VEGFA-230ENST00000640482 SLC10A3P09131 477 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 SLC5A1P13866 664 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 TTLL12Q14166 644 aaPredicted RBP31.43■■■□□ 2.62
VEGFA-230ENST00000640482 ATG9AQ7Z3C6 839 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 TBC1D22AQ8WUA7 517 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 LPIN2Q92539 896 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 SIL1Q9H173 461 aa31.43■■■□□ 2.62
VEGFA-230ENST00000640482 IQSEC3Q9UPP2 1182 aaPredicted RBP31.43■■■□□ 2.62
VEGFA-230ENST00000640482 BCAMP50895 628 aa31.42■■■□□ 2.62
VEGFA-230ENST00000640482 CHAF1AQ13111 956 aaPredicted RBP31.42■■■□□ 2.62
VEGFA-230ENST00000640482 ZIC5Q96T25 663 aa31.42■■■□□ 2.62
VEGFA-230ENST00000640482 SERPINA10Q9UK55 444 aa31.42■■■□□ 2.62
VEGFA-230ENST00000640482 PCDHAC2Q9Y5I4 1007 aa31.42■■■□□ 2.62
VEGFA-230ENST00000640482 PRMT6Q96LA8 375 aaPredicted RBP31.41■■■□□ 2.62
VEGFA-230ENST00000640482 DEFB129Q9H1M3 183 aa31.41■■■□□ 2.62
VEGFA-230ENST00000640482 CEP126Q9P2H0 1117 aa31.41■■■□□ 2.62
VEGFA-230ENST00000640482 PPP2R3BQ9Y5P8 575 aa31.41■■■□□ 2.62
VEGFA-230ENST00000640482 ARAP2Q8WZ64 1704 aa31.41■■■□□ 2.62
VEGFA-230ENST00000640482 MOB2Q70IA6 237 aa31.4■■■□□ 2.62
VEGFA-230ENST00000640482 CLRN2A0PK11 232 aa31.39■■■□□ 2.62
VEGFA-230ENST00000640482 UBE2Q2LH0YL09 131 aa31.39■■■□□ 2.62
VEGFA-230ENST00000640482 IL15P40933 162 aaPredicted RBP31.39■■■□□ 2.62
VEGFA-230ENST00000640482 KIF23Q02241 960 aaPredicted RBP31.39■■■□□ 2.62
VEGFA-230ENST00000640482 RASAL3Q86YV0 1011 aa31.39■■■□□ 2.62
VEGFA-230ENST00000640482 VEZTQ9HBM0 779 aa31.39■■■□□ 2.62
VEGFA-230ENST00000640482 ECM29Q5VYK3 1845 aa31.38■■■□□ 2.61
VEGFA-230ENST00000640482 ARMC9Q7Z3E5 817 aa31.38■■■□□ 2.61
VEGFA-230ENST00000640482 COPRSQ9NQ92 184 aa31.38■■■□□ 2.61
VEGFA-230ENST00000640482 ZBED9Q6R2W3 1325 aa31.38■■■□□ 2.61
VEGFA-230ENST00000640482 ZKSCAN2Q63HK3 967 aa31.37■■■□□ 2.61
VEGFA-230ENST00000640482 CLUAP1Q96AJ1 413 aa31.37■■■□□ 2.61
VEGFA-230ENST00000640482 TSKSQ9UJT2 592 aa31.37■■■□□ 2.61
VEGFA-230ENST00000640482 PA2G4Q9UQ80 394 aaKnown RBP31.37■■■□□ 2.61
VEGFA-230ENST00000640482 ATP2B3Q16720 1220 aa31.36■■■□□ 2.61
VEGFA-230ENST00000640482 TNNQ9UQP3 1299 aa31.36■■■□□ 2.61
VEGFA-230ENST00000640482 SRGAP3O43295 1099 aa31.35■■■□□ 2.61
VEGFA-230ENST00000640482 CRKP46108 304 aa31.35■■■□□ 2.61
VEGFA-230ENST00000640482 REM2Q8IYK8 340 aaPredicted RBP31.35■■■□□ 2.61
VEGFA-230ENST00000640482 GNAI2P04899 355 aa31.34■■■□□ 2.61
VEGFA-230ENST00000640482 HDLBPQ00341 1268 aaKnown RBP31.34■■■□□ 2.61
VEGFA-230ENST00000640482 MTX1Q13505 466 aa31.34■■■□□ 2.61
VEGFA-230ENST00000640482 TNFAIP1Q13829 316 aa31.34■■■□□ 2.61
VEGFA-230ENST00000640482 DZIP1LQ8IYY4 767 aaKnown RBP31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms