RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	HNRNPU	Q00839	825 aa	Known RBP eCLIP	31.56	■■■□□ 2.64	8e-7	■□□□□ 10.9
VEGFA-228	ENST00000617771	TNS4	Q8IZW8	715 aa		31.56	■■■□□ 2.64
VEGFA-228	ENST00000617771	KLHDC4	Q8TBB5	520 aa		31.56	■■■□□ 2.64
VEGFA-228	ENST00000617771	PRDM10	Q9NQV6	1147 aa		31.56	■■■□□ 2.64
VEGFA-228	ENST00000617771	RGMB	Q6NW40	437 aa		31.55	■■■□□ 2.64
VEGFA-228	ENST00000617771	TDRD7	Q8NHU6	1098 aa	Known RBP	31.55	■■■□□ 2.64
VEGFA-228	ENST00000617771	FAM84B	Q96KN1	310 aa	Predicted RBP	31.55	■■■□□ 2.64
VEGFA-228	ENST00000617771	PDE8B	O95263	885 aa		31.54	■■■□□ 2.64
VEGFA-228	ENST00000617771	NOG	Q13253	232 aa		31.54	■■■□□ 2.64
VEGFA-228	ENST00000617771	DLGAP5	Q15398	846 aa		31.54	■■■□□ 2.64
VEGFA-228	ENST00000617771	VPS37D	Q86XT2	251 aa		31.54	■■■□□ 2.64
VEGFA-228	ENST00000617771	FAM205A	Q6ZU69	1335 aa		31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	FKBP1B	P68106	108 aa		31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	APOBEC3F	Q8IUX4	373 aa	Known RBP	31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	VGLL2	Q8N8G2	317 aa		31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	ZBED3	Q96IU2	234 aa	Predicted RBP	31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	SCAF8	Q9UPN6	1271 aa	Known RBP	31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771	JAG2	Q9Y219	1238 aa		31.53	■■■□□ 2.64
VEGFA-228	ENST00000617771		F8W031	263 aa	Predicted RBP	31.52	■■■□□ 2.64
VEGFA-228	ENST00000617771	IPO8	O15397	1037 aa	Known RBP	31.52	■■■□□ 2.64
VEGFA-228	ENST00000617771	RFX5	P48382	616 aa	Predicted RBP	31.52	■■■□□ 2.64
VEGFA-228	ENST00000617771	CAVIN4	Q5BKX8	364 aa		31.52	■■■□□ 2.64
VEGFA-228	ENST00000617771	MTMR14	Q8NCE2	650 aa		31.52	■■■□□ 2.64
VEGFA-228	ENST00000617771	CCDC102A	Q96A19	550 aa		31.51	■■■□□ 2.63
VEGFA-228	ENST00000617771	EYA2	O00167	538 aa		31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	HSPA8	P11142	646 aa	Known RBP	31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	ZNF157	P51786	506 aa	Predicted RBP	31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	LBX1	P52954	281 aa		31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	PTPN12	Q05209	780 aa	Known RBP	31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	INTS3	Q68E01	1043 aa	Known RBP	31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	FBXO33	Q7Z6M2	555 aa		31.5	■■■□□ 2.63
VEGFA-228	ENST00000617771	PUM3	Q15397	648 aa	Known RBP	31.49	■■■□□ 2.63
VEGFA-228	ENST00000617771	MFSD14B	Q5SR56	506 aa		31.49	■■■□□ 2.63
VEGFA-228	ENST00000617771	LRRFIP2	Q9Y608	721 aa	Known RBP	31.49	■■■□□ 2.63
VEGFA-228	ENST00000617771	PAPPA2	Q9BXP8	1791 aa		31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	IFIT1	P09914	478 aa	Known RBP	31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	NF2	P35240	595 aa		31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	CFAP100	Q494V2	611 aa		31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	MEIS3	Q99687	375 aa		31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	FBXO3	Q9UK99	471 aa		31.48	■■■□□ 2.63
VEGFA-228	ENST00000617771	CA12	O43570	354 aa		31.47	■■■□□ 2.63
VEGFA-228	ENST00000617771	MYO1B	O43795	1136 aa		31.47	■■■□□ 2.63
VEGFA-228	ENST00000617771	PRAMEF18	Q5VWM3	479 aa		31.47	■■■□□ 2.63
VEGFA-228	ENST00000617771	FAM155A	B1AL88	458 aa	Predicted RBP	31.46	■■■□□ 2.63
VEGFA-228	ENST00000617771	FRAT2	O75474	233 aa	Predicted RBP	31.46	■■■□□ 2.63
VEGFA-228	ENST00000617771	GNAI3	P08754	354 aa		31.46	■■■□□ 2.63
VEGFA-228	ENST00000617771	FRAT1	Q92837	279 aa	Predicted RBP	31.46	■■■□□ 2.63
VEGFA-228	ENST00000617771	SPDYE2B	A6NHP3	402 aa		31.45	■■■□□ 2.63
VEGFA-228	ENST00000617771	BCAR3	O75815	825 aa		31.45	■■■□□ 2.63
VEGFA-228	ENST00000617771	SPDYE6	P0CI01	402 aa		31.45	■■■□□ 2.63
VEGFA-228	ENST00000617771	RBM5	P52756	815 aa	Known RBP eCLIP	31.45	■■■□□ 2.63	1e-9	■□□□□ 9.1
VEGFA-228	ENST00000617771	ATF7IP	Q6VMQ6	1270 aa		31.45	■■■□□ 2.63
VEGFA-228	ENST00000617771	COL1A1	P02452	1464 aa	Predicted RBP	31.45	■■■□□ 2.62
VEGFA-228	ENST00000617771	CIAO1	O76071	339 aa		31.44	■■■□□ 2.62
VEGFA-228	ENST00000617771	TRIM27	P14373	513 aa		31.44	■■■□□ 2.62
VEGFA-228	ENST00000617771	FGFR2	P21802	821 aa		31.44	■■■□□ 2.62
VEGFA-228	ENST00000617771	TTF2	Q9UNY4	1162 aa	Known RBP	31.44	■■■□□ 2.62
VEGFA-228	ENST00000617771	SLC10A3	P09131	477 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	SLC5A1	P13866	664 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	TTLL12	Q14166	644 aa	Predicted RBP	31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	ATG9A	Q7Z3C6	839 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	TBC1D22A	Q8WUA7	517 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	LPIN2	Q92539	896 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	SIL1	Q9H173	461 aa		31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	31.43	■■■□□ 2.62
VEGFA-228	ENST00000617771	BCAM	P50895	628 aa		31.42	■■■□□ 2.62
VEGFA-228	ENST00000617771	CHAF1A	Q13111	956 aa	Predicted RBP	31.42	■■■□□ 2.62
VEGFA-228	ENST00000617771	ZIC5	Q96T25	663 aa		31.42	■■■□□ 2.62
VEGFA-228	ENST00000617771	SERPINA10	Q9UK55	444 aa		31.42	■■■□□ 2.62
VEGFA-228	ENST00000617771	PCDHAC2	Q9Y5I4	1007 aa		31.42	■■■□□ 2.62
VEGFA-228	ENST00000617771	PRMT6	Q96LA8	375 aa	Predicted RBP	31.41	■■■□□ 2.62
VEGFA-228	ENST00000617771	DEFB129	Q9H1M3	183 aa		31.41	■■■□□ 2.62
VEGFA-228	ENST00000617771	CEP126	Q9P2H0	1117 aa		31.41	■■■□□ 2.62
VEGFA-228	ENST00000617771	PPP2R3B	Q9Y5P8	575 aa		31.41	■■■□□ 2.62
VEGFA-228	ENST00000617771	ARAP2	Q8WZ64	1704 aa		31.41	■■■□□ 2.62
VEGFA-228	ENST00000617771	MOB2	Q70IA6	237 aa		31.4	■■■□□ 2.62
VEGFA-228	ENST00000617771	CLRN2	A0PK11	232 aa		31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	UBE2Q2L	H0YL09	131 aa		31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	IL15	P40933	162 aa	Predicted RBP	31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	KIF23	Q02241	960 aa	Predicted RBP	31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	RASAL3	Q86YV0	1011 aa		31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	VEZT	Q9HBM0	779 aa		31.39	■■■□□ 2.62
VEGFA-228	ENST00000617771	ECM29	Q5VYK3	1845 aa		31.38	■■■□□ 2.61
VEGFA-228	ENST00000617771	ARMC9	Q7Z3E5	817 aa		31.38	■■■□□ 2.61
VEGFA-228	ENST00000617771	COPRS	Q9NQ92	184 aa		31.38	■■■□□ 2.61
VEGFA-228	ENST00000617771	ZBED9	Q6R2W3	1325 aa		31.38	■■■□□ 2.61
VEGFA-228	ENST00000617771	ZKSCAN2	Q63HK3	967 aa		31.37	■■■□□ 2.61
VEGFA-228	ENST00000617771	CLUAP1	Q96AJ1	413 aa		31.37	■■■□□ 2.61
VEGFA-228	ENST00000617771	TSKS	Q9UJT2	592 aa		31.37	■■■□□ 2.61
VEGFA-228	ENST00000617771	PA2G4	Q9UQ80	394 aa	Known RBP	31.37	■■■□□ 2.61
VEGFA-228	ENST00000617771	ATP2B3	Q16720	1220 aa		31.36	■■■□□ 2.61
VEGFA-228	ENST00000617771	TNN	Q9UQP3	1299 aa		31.36	■■■□□ 2.61
VEGFA-228	ENST00000617771	SRGAP3	O43295	1099 aa		31.35	■■■□□ 2.61
VEGFA-228	ENST00000617771	CRK	P46108	304 aa		31.35	■■■□□ 2.61
VEGFA-228	ENST00000617771	REM2	Q8IYK8	340 aa	Predicted RBP	31.35	■■■□□ 2.61
VEGFA-228	ENST00000617771	GNAI2	P04899	355 aa		31.34	■■■□□ 2.61
VEGFA-228	ENST00000617771	HDLBP	Q00341	1268 aa	Known RBP	31.34	■■■□□ 2.61
VEGFA-228	ENST00000617771	MTX1	Q13505	466 aa		31.34	■■■□□ 2.61
VEGFA-228	ENST00000617771	TNFAIP1	Q13829	316 aa		31.34	■■■□□ 2.61
VEGFA-228	ENST00000617771	DZIP1L	Q8IYY4	767 aa	Known RBP	31.34	■■■□□ 2.61

Retrieved 100 of 20,778 RNA–protein pairs in 12 ms