RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ZNF280AP59817 542 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-214ENST00000600840 DCAF8Q5TAQ9 597 aa11.01□□□□□ -0.65
TRIM28-214ENST00000600840 SULF1Q8IWU6 871 aa11.01□□□□□ -0.65
TRIM28-214ENST00000600840 R3HDMLQ9H3Y0 253 aa11.01□□□□□ -0.65
TRIM28-214ENST00000600840 MED23Q9ULK4 1368 aa11.01□□□□□ -0.65
TRIM28-214ENST00000600840 RBBP6Q7Z6E9 1792 aaKnown RBP11□□□□□ -0.65
TRIM28-214ENST00000600840 USP17L3A6NCW0 530 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 USP17L4A6NCW7 530 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 MKRN3Q13064 507 aaKnown RBP11□□□□□ -0.65
TRIM28-214ENST00000600840 SCARF1Q14162 830 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 SLC4A10Q6U841 1118 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 USP17L1Q7RTZ2 530 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 AGBL3Q8NEM8 1001 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 HELBQ8NG08 1087 aaPredicted RBP11□□□□□ -0.65
TRIM28-214ENST00000600840 GTF3C3Q9Y5Q9 886 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 IRS2Q9Y4H2 1338 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 ZNF609O15014 1411 aa11□□□□□ -0.65
TRIM28-214ENST00000600840 UBE2Q2LH0YL09 131 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 TAF5LO75529 589 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 NBPF7P0C2Y1 421 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-214ENST00000600840 IGHMBP2P38935 993 aaKnown RBP10.99□□□□□ -0.65
TRIM28-214ENST00000600840 CHRNDQ07001 517 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 DACT2Q5SW24 774 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 ANGEL2Q5VTE6 544 aaKnown RBP10.99□□□□□ -0.65
TRIM28-214ENST00000600840 PRAMEF18Q5VWM3 479 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 PODNQ7Z5L7 613 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 ZNF594Q96JF6 807 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-214ENST00000600840 COG6Q9Y2V7 657 aa10.99□□□□□ -0.65
TRIM28-214ENST00000600840 GRM8O00222 908 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 USP17L8P0C7I0 530 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 MS4A1P11836 297 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 MVPQ14764 893 aaKnown RBP10.98□□□□□ -0.65
TRIM28-214ENST00000600840 NBPF9Q3BBW0 867 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 REM2Q8IYK8 340 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-214ENST00000600840 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-214ENST00000600840 MEIS3Q99687 375 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 MYOZ2Q9NPC6 264 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 LEMD3Q9Y2U8 911 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 ZNF804BA4D1E1 1349 aa10.98□□□□□ -0.65
TRIM28-214ENST00000600840 ANKRD18BA2A2Z9 1011 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 LMBR1LQ6UX01 489 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 FBXW7Q969H0 707 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 MPHOSPH8Q99549 860 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 COA1Q9GZY4 146 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 ZBTB40Q9NUA8 1239 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-214ENST00000600840 PCDHAC2Q9Y5I4 1007 aa10.97□□□□□ -0.65
TRIM28-214ENST00000600840 FKTNO75072 461 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 GTF2IP78347 998 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 TTLL5Q6EMB2 1281 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 CERS5Q8N5B7 392 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 SUCLG2Q96I99 432 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 CD209Q9NNX6 404 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 CHMP3Q9Y3E7 222 aa10.96□□□□□ -0.65
TRIM28-214ENST00000600840 WNT10BO00744 389 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 SASH1O94885 1247 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 EN2P19622 333 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-214ENST00000600840 TM4SF4P48230 202 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 IFIT5Q13325 482 aaKnown RBP10.95□□□□□ -0.66
TRIM28-214ENST00000600840 RABL6Q3YEC7 729 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-214ENST00000600840 STRIP1Q5VSL9 837 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 KIAA0825Q8IV33 1275 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 FTSJ3Q8IY81 847 aaKnown RBP10.95□□□□□ -0.66
TRIM28-214ENST00000600840 ANKRD44Q8N8A2 993 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 CRBNQ96SW2 442 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 PUS3Q9BZE2 481 aaKnown RBP10.95□□□□□ -0.66
TRIM28-214ENST00000600840 ANKRD2Q9GZV1 360 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 TRIM17Q9Y577 477 aa10.95□□□□□ -0.66
TRIM28-214ENST00000600840 AOX1Q06278 1338 aa10.94□□□□□ -0.66
TRIM28-214ENST00000600840 FKBP1BP68106 108 aa10.94□□□□□ -0.66
TRIM28-214ENST00000600840 TTLL12Q14166 644 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-214ENST00000600840 NOM1Q5C9Z4 860 aaKnown RBP10.94□□□□□ -0.66
TRIM28-214ENST00000600840 ITPRIPQ8IWB1 547 aa10.94□□□□□ -0.66
TRIM28-214ENST00000600840 ZBED3Q96IU2 234 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-214ENST00000600840 C9orf78Q9NZ63 289 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-214ENST00000600840 DDX19BQ9UMR2 479 aa10.94□□□□□ -0.66
TRIM28-214ENST00000600840 JAG2Q9Y219 1238 aa10.94□□□□□ -0.66
TRIM28-214ENST00000600840 PITPNM2Q9BZ72 1349 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 GNAI3P08754 354 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 KCNJ4P48050 445 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 MTX1Q13505 466 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 LDHAL6AQ6ZMR3 332 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 C15orf52Q6ZUT6 534 aaKnown RBP10.93□□□□□ -0.66
TRIM28-214ENST00000600840 OTOP1Q7RTM1 612 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 SIRT2Q8IXJ6 389 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 EXOC6Q8TAG9 804 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 FZD1Q9UP38 647 aa10.93□□□□□ -0.66
TRIM28-214ENST00000600840 DLL1O00548 723 aa10.92□□□□□ -0.66
TRIM28-214ENST00000600840 IL1R1P14778 569 aa10.92□□□□□ -0.66
TRIM28-214ENST00000600840 RFX5P48382 616 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-214ENST00000600840 PRKG1Q13976 671 aa10.92□□□□□ -0.66
TRIM28-214ENST00000600840 BICC1Q9H694 974 aaKnown RBP10.92□□□□□ -0.66
TRIM28-214ENST00000600840 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-214ENST00000600840 MYO3BQ8WXR4 1341 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 F8W031 263 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-214ENST00000600840 GNAI2P04899 355 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 UBTFL1P0CB47 393 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-214ENST00000600840 IRX6P78412 446 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-214ENST00000600840 ATP8B2P98198 1209 aa10.91□□□□□ -0.66
TRIM28-214ENST00000600840 CAP1Q01518 475 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms