RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 LMBR1LQ6UX01 489 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 MTMR14Q8NCE2 650 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 FBXW7Q969H0 707 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 FZD1Q9UP38 647 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 CENPFP49454 3210 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 MYH13Q9UKX3 1938 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 BRCA2P51587 3418 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 ANP32CO43423 234 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 TM4SF4P48230 202 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 MMP14P50281 582 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 PTPN12Q05209 780 aaKnown RBP8.55□□□□□ -1.04
VPS53-213ENST00000572334 IFIT5Q13325 482 aaKnown RBP8.55□□□□□ -1.04
VPS53-213ENST00000572334 LDLRAD1Q5T700 205 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 OGFOD1Q8N543 542 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 SUCLG2Q96I99 432 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 PUS3Q9BZE2 481 aaKnown RBP8.55□□□□□ -1.04
VPS53-213ENST00000572334 R3HDMLQ9H3Y0 253 aa8.55□□□□□ -1.04
VPS53-213ENST00000572334 COL1A1P02452 1464 aaPredicted RBP8.55□□□□□ -1.04
VPS53-213ENST00000572334 UTYO14607 1347 aa8.54□□□□□ -1.04
VPS53-213ENST00000572334 NBPF7P0C2Y1 421 aaPredicted RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 FKBP1AP62942 108 aaKnown RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 MAP3K11Q16584 847 aa8.54□□□□□ -1.04
VPS53-213ENST00000572334 APOBEC3FQ8IUX4 373 aaKnown RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 REM2Q8IYK8 340 aaPredicted RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 FAM9BQ8IZU0 186 aa8.54□□□□□ -1.04
VPS53-213ENST00000572334 PRMT6Q96LA8 375 aaPredicted RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 JAG2Q9Y219 1238 aa8.54□□□□□ -1.04
VPS53-213ENST00000572334 KIAA0100Q14667 2235 aaKnown RBP8.54□□□□□ -1.04
VPS53-213ENST00000572334 FAM205AQ6ZU69 1335 aa8.54□□□□□ -1.04
VPS53-213ENST00000572334 SPDYE2BA6NHP3 402 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 ALDH1L1O75891 902 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 TBC1D8O95759 1140 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 SPDYE6P0CI01 402 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 KCNJ4P48050 445 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 MLLT1Q03111 559 aaPredicted RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 MKRN3Q13064 507 aaKnown RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 PRKG1Q13976 671 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 GRIK5Q16478 980 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 RABL6Q3YEC7 729 aaPredicted RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 CFAP100Q494V2 611 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 LDHAL6AQ6ZMR3 332 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 MRPL50Q8N5N7 158 aaKnown RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 ANKRD44Q8N8A2 993 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 TDRD7Q8NHU6 1098 aaKnown RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 ZNF296Q8WUU4 475 aaPredicted RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 FAM84BQ96KN1 310 aaPredicted RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 CFHR5Q9BXR6 569 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 DEFB129Q9H1M3 183 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 HDAC9Q9UKV0 1011 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 CHMP3Q9Y3E7 222 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 RIPOR2Q9Y4F9 1068 aa8.53□□□□□ -1.04
VPS53-213ENST00000572334 MKI67P46013 3256 aaKnown RBP8.53□□□□□ -1.04
VPS53-213ENST00000572334 CLRN2A0PK11 232 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 F8W031 263 aaPredicted RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 PLIN1O60240 522 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 GJA5P36382 358 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 GYG1P46976 350 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 TTLL12Q14166 644 aaPredicted RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 DLGAP5Q15398 846 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 CCDC57Q2TAC2 916 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 NOM1Q5C9Z4 860 aaKnown RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 NBPF12Q5TAG4 269 aaPredicted RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 SPRYD7Q5W111 196 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 SLC4A10Q6U841 1118 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 ZNF804AQ7Z570 1209 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 CTU1Q7Z7A3 348 aaKnown RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 CDAN1Q8IWY9 1227 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 VGLL2Q8N8G2 317 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 CLMNQ96JQ2 1002 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 SRCIN1Q9C0H9 1055 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 CNNM1Q9NRU3 951 aa8.52□□□□□ -1.05
VPS53-213ENST00000572334 ANGEL1Q9UNK9 670 aaKnown RBP8.52□□□□□ -1.05
VPS53-213ENST00000572334 GPR25O00155 361 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 USP2O75604 605 aaPredicted RBP8.51□□□□□ -1.05
VPS53-213ENST00000572334 CAP1Q01518 475 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 UBE4AQ14139 1066 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 LRRC24Q50LG9 513 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 ARMC9Q7Z3E5 817 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 FBXO33Q7Z6M2 555 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 TEPSINQ96N21 525 aa8.51□□□□□ -1.05
VPS53-213ENST00000572334 BICC1Q9H694 974 aaKnown RBP8.51□□□□□ -1.05
VPS53-213ENST00000572334 C9orf78Q9NZ63 289 aaPredicted RBP8.51□□□□□ -1.05
VPS53-213ENST00000572334 RBBP6Q7Z6E9 1792 aaKnown RBP8.5□□□□□ -1.05
VPS53-213ENST00000572334 ZSWIM8A7E2V4 1837 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 IGF2BP3O00425 579 aaKnown RBP eCLIP8.5□□□□□ -1.05
VPS53-213ENST00000572334 NF2P35240 595 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 RFX5P48382 616 aaPredicted RBP8.5□□□□□ -1.05
VPS53-213ENST00000572334 SOX10P56693 466 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 RASA3Q14644 834 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 SPDYE2Q495Y8 402 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 MFSD14BQ5SR56 506 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 KLHDC4Q8TBB5 520 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 SSH1Q8WYL5 1049 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 WNK4Q96J92 1243 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 USP44Q9H0E7 712 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 HPS5Q9UPZ3 1129 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 PPP2R3BQ9Y5P8 575 aa8.5□□□□□ -1.05
VPS53-213ENST00000572334 AK9Q5TCS8 1911 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 SLC34A2O95436 690 aa8.49□□□□□ -1.05
VPS53-213ENST00000572334 FGFR2P21802 821 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms