RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	ALK	Q9UM73	1620 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	N4BP3	O15049	544 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	TUBB4A	P04350	444 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	BRMS1	Q9HCU9	246 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	ZC3H13	Q5T200	1668 aa	Known RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	CTAGE15	A4D2H0	777 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	TAF5L	O75529	589 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	CTAGE8	P0CG41	777 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	MATR3	P43243	847 aa	Known RBP eCLIP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	EIF5	P55010	431 aa	Known RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	ANO1	Q5XXA6	986 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	NAA16	Q6N069	864 aa	Predicted RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	CTAGE6	Q86UF2	777 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	CTAGE4	Q8IX94	777 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	TRMT44	Q8IYL2	757 aa	Known RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	CCDC148	Q8NFR7	591 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	WDHD1	O75717	1129 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	TDO2	P48775	406 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	SYCP1	Q15431	976 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	AMOT	Q4VCS5	1084 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	AIDA	Q96BJ3	306 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	SLC12A7	Q9Y666	1083 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	IFT172	Q9UG01	1749 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	CTIF	O43310	598 aa	Known RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	KIAA0754	O94854	1291 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	CYP21A2	P08686	494 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	PNMA6A	P0CW24	399 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	NLRP12	P59046	1061 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	PROSER3	Q2NL68	480 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	CTR9	Q6PD62	1173 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	NEO1	Q92859	1461 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	MARCH6	O60337	910 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	TNNI3K	Q59H18	835 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	TMEM67	Q5HYA8	995 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	LLPH	Q9BRT6	129 aa	Known RBP	13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	FPGT-TNNI3K	V9GXZ4	949 aa		13.07	□□□□□ -0.32
CLN3-238	ENST00000569430	ATP1A3	P13637	1013 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	PNOC	Q13519	176 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	METTL24	Q5JXM2	366 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	CCDC181	Q5TID7	509 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	ADAL	Q6DHV7	355 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	CLIC4	Q9Y696	253 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	RDX	P35241	583 aa	Known RBP	13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	REST	Q13127	1097 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	GDAP1L1	Q96MZ0	367 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	PHF8	Q9UPP1	1060 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	CPS1	P31327	1500 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	ARHGEF40	Q8TER5	1519 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	CHMP4BP1	P59074	171 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	SSRP1	Q08945	709 aa	Known RBP	13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	CCDC47	Q96A33	483 aa	Known RBP	13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	FANCL	Q9NW38	375 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	NFE2L3	Q9Y4A8	694 aa		13.06	□□□□□ -0.32
CLN3-238	ENST00000569430	DNAJC21	Q5F1R6	531 aa	Known RBP	13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	CAPZA3	Q96KX2	299 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	UBAC1	Q9BSL1	405 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	RCOR1	Q9UKL0	485 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	TTC21A	Q8NDW8	1320 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	CTAGE9	A4FU28	777 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	ARHGAP6	O43182	974 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	TOB2	Q14106	344 aa	Predicted RBP	13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	LONRF3	Q496Y0	759 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	ATL3	Q6DD88	541 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	DHX58	Q96C10	678 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	NAPB	Q9H115	298 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	GUCA1B	Q9UMX6	200 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	COL3A1	P02461	1466 aa	Predicted RBP	13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	A2ML1	A8K2U0	1454 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	MINDY4B	A8MYZ0	360 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	PFKFB1	P16118	471 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	ZNF827	Q17R98	1081 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	MICALL1	Q8N3F8	863 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	PHKB	Q93100	1093 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	GJB4	Q9NTQ9	266 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	TAF6L	Q9Y6J9	622 aa		13.05	□□□□□ -0.32
CLN3-238	ENST00000569430	ZBTB43	O43298	467 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	IVL	P07476	585 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	CDC25B	P30305	580 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	MNAT1	P51948	309 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	POLA2	Q14181	598 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	SLFNL1	Q499Z3	407 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	MYSM1	Q5VVJ2	828 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	MPHOSPH8	Q99549	860 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	AATK	Q6ZMQ8	1374 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430		E7EWF7	191 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	POTEB2	H3BUK9	544 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	AKAP4	Q5JQC9	854 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	BRAP	Q7Z569	592 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	NFATC2IP	Q8NCF5	419 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	NSUN7	Q8NE18	718 aa	Known RBP	13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	FUCA2	Q9BTY2	467 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	SLFN14	P0C7P3	912 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	IRX3	P78415	501 aa	Predicted RBP	13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	MAP9	Q49MG5	647 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	VPS37D	Q86XT2	251 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	KCNH3	Q9ULD8	1083 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	PPP2R2C	Q9Y2T4	447 aa		13.04	□□□□□ -0.32
CLN3-238	ENST00000569430	PRAMEF22	A3QJZ6	481 aa		13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms