RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 EPHA10Q5JZY3 1008 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 REXO1L1PQ8IX06 675 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 CNTROBQ8N137 903 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 KLHDC4Q8TBB5 520 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 ATP5J2-PTCD1G3V325 749 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 SASH3O75995 380 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 IFIT2P09913 472 aaKnown RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 TTC31Q49AM3 519 aaPredicted RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 AACSQ86V21 672 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 GOLGA5Q8TBA6 731 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 UBXN6Q9BZV1 441 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 L2HGDHQ9H9P8 463 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 NBPF26B4DH59 902 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 GLRX3O76003 335 aaKnown RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 SASH1O94885 1247 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 E2F4Q16254 413 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 NBPF14Q5TI25 921 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 NBPF10Q6P3W6 841 aaKnown RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 UBE3BQ7Z3V4 1068 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 NBPF15Q8N660 670 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 TDRD7Q8NHU6 1098 aaKnown RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 GJD4Q96KN9 370 aaPredicted RBP15.49■□□□□ 0.07
CLK3-206ENST00000562078 THSD7AQ9UPZ6 1657 aa15.49■□□□□ 0.07
CLK3-206ENST00000562078 ANAPC15P60006 121 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 CCZ1BP86790 482 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 CCZ1P86791 482 aaPredicted RBP15.48■□□□□ 0.07
CLK3-206ENST00000562078 G3BP1Q13283 466 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLK3-206ENST00000562078 CCDC34Q96HJ3 373 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 CEP83Q9Y592 693 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 ATP6V1DQ9Y5K8 247 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 CCDC69A6NI79 296 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 CCDC172P0C7W6 258 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 LMAN1P49257 510 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 PLBD2Q8NHP8 589 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 GPATCH3Q96I76 525 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 DNAJC25Q9H1X3 360 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 ECHDC1Q9NTX5 307 aa15.48■□□□□ 0.07
CLK3-206ENST00000562078 TRPC5Q9UL62 973 aaPredicted RBP15.48■□□□□ 0.07
CLK3-206ENST00000562078 ATP2B1P20020 1258 aa15.47■□□□□ 0.07
CLK3-206ENST00000562078 CASTP20810 708 aaKnown RBP15.47■□□□□ 0.07
CLK3-206ENST00000562078 GORABQ5T7V8 394 aa15.47■□□□□ 0.07
CLK3-206ENST00000562078 FILIP1Q7Z7B0 1213 aa15.47■□□□□ 0.07
CLK3-206ENST00000562078 TNMDQ9H2S6 317 aa15.47■□□□□ 0.07
CLK3-206ENST00000562078 HSP90B1P14625 803 aaKnown RBP15.46■□□□□ 0.07
CLK3-206ENST00000562078 ZNF165P49910 485 aa15.46■□□□□ 0.07
CLK3-206ENST00000562078 CCDC93Q567U6 631 aa15.46■□□□□ 0.07
CLK3-206ENST00000562078 A1BGP04217 495 aa15.46■□□□□ 0.07
CLK3-206ENST00000562078 SMC1AQ14683 1233 aaKnown RBP15.46■□□□□ 0.07
CLK3-206ENST00000562078 ARGLU1Q9NWB6 273 aaPredicted RBP15.46■□□□□ 0.07
CLK3-206ENST00000562078 ORC3Q9UBD5 711 aaPredicted RBP15.46■□□□□ 0.07
CLK3-206ENST00000562078 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.46■□□□□ 0.072e-9■□□□□ 8.2
CLK3-206ENST00000562078 ATRNO75882 1429 aa15.46■□□□□ 0.07
CLK3-206ENST00000562078 A0A087WZG4 1122 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 SGSM2O43147 1006 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 SNW1Q13573 536 aaKnown RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 TTLL7Q6ZT98 887 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 EAF2Q96CJ1 260 aaPredicted RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 DACT1Q9NYF0 836 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 CDC25BP30305 580 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 CWC27Q6UX04 472 aaKnown RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 TTC6Q86TZ1 520 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 DNAJC10Q8IXB1 793 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 TEX13AQ9BXU3 409 aaPredicted RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 CCDC8Q9H0W5 538 aaPredicted RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 TLR7Q9NYK1 1049 aaKnown RBP15.45■□□□□ 0.06
CLK3-206ENST00000562078 SMC3Q9UQE7 1217 aa15.45■□□□□ 0.06
CLK3-206ENST00000562078 TBC1D8O95759 1140 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 MAGEA9P43362 315 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 EPC1Q9H2F5 836 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 MTMR6Q9Y217 621 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 NEMFO60524 1076 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 NOM1Q5C9Z4 860 aaKnown RBP15.44■□□□□ 0.06
CLK3-206ENST00000562078 FOXR1Q6PIV2 292 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 UBXN4Q92575 508 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 AK7Q96M32 723 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 ADAM21Q9UKJ8 722 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 ELP1O95163 1332 aa15.44■□□□□ 0.06
CLK3-206ENST00000562078 STARD3NLO95772 234 aa15.43■□□□□ 0.06
CLK3-206ENST00000562078 DEF6Q9H4E7 631 aa15.43■□□□□ 0.06
CLK3-206ENST00000562078 ZBTB3Q9H5J0 574 aa15.43■□□□□ 0.06
CLK3-206ENST00000562078 QTRT2Q9H974 415 aaKnown RBP15.43■□□□□ 0.06
CLK3-206ENST00000562078 ZNF330Q9Y3S2 320 aaPredicted RBP15.43■□□□□ 0.06
CLK3-206ENST00000562078 ACTN2P35609 894 aa15.43■□□□□ 0.06
CLK3-206ENST00000562078 COL15A1P39059 1388 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 VPS37CA5D8V6 355 aaPredicted RBP15.42■□□□□ 0.06
CLK3-206ENST00000562078 ANKRD65E5RJM6 399 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 KCNQ2O43526 872 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 FAM173BQ6P4H8 233 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 CXorf56Q9H5V9 222 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 KIF2AO00139 706 aaPredicted RBP15.42■□□□□ 0.06
CLK3-206ENST00000562078 HSPA4P34932 840 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 RFX5P48382 616 aaPredicted RBP15.42■□□□□ 0.06
CLK3-206ENST00000562078 AK2P54819 239 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 CASP7P55210 303 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 RABL6Q3YEC7 729 aaPredicted RBP15.42■□□□□ 0.06
CLK3-206ENST00000562078 RUFY3Q7L099 469 aa15.42■□□□□ 0.06
CLK3-206ENST00000562078 EIF3CLB5ME19 914 aaKnown RBP15.41■□□□□ 0.06
CLK3-206ENST00000562078 LARGE1O95461 756 aa15.41■□□□□ 0.06
CLK3-206ENST00000562078 GJB2P29033 226 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms