RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 WNT10BO00744 389 aa14.7□□□□□ -0.06
LDLR-212ENST00000560467 TNRC18O15417 2968 aaPredicted RBP14.7□□□□□ -0.06
LDLR-212ENST00000560467 KLRK1P26718 216 aa14.7□□□□□ -0.06
LDLR-212ENST00000560467 CWF19L2Q2TBE0 894 aaKnown RBP14.7□□□□□ -0.06
LDLR-212ENST00000560467 TXNRD3Q86VQ6 643 aa14.7□□□□□ -0.06
LDLR-212ENST00000560467 ZNF296Q8WUU4 475 aaPredicted RBP14.7□□□□□ -0.06
LDLR-212ENST00000560467 SRCIN1Q9C0H9 1055 aa14.7□□□□□ -0.06
LDLR-212ENST00000560467 GNAI3P08754 354 aa14.69□□□□□ -0.06
LDLR-212ENST00000560467 HDAC9Q9UKV0 1011 aa14.69□□□□□ -0.06
LDLR-212ENST00000560467 NEURL1BA8MQ27 555 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 RLBP1P12271 317 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 PRKG1Q13976 671 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 STRIP1Q5VSL9 837 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 UBE3BQ7Z3V4 1068 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 OGFOD1Q8N543 542 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 COA1Q9GZY4 146 aa14.68□□□□□ -0.06
LDLR-212ENST00000560467 F6X3S4 739 aa14.67□□□□□ -0.06
LDLR-212ENST00000560467 ALDH1L1O75891 902 aa14.67□□□□□ -0.06
LDLR-212ENST00000560467 PTPN12Q05209 780 aaKnown RBP14.67□□□□□ -0.06
LDLR-212ENST00000560467 KIAA0825Q8IV33 1275 aa14.67□□□□□ -0.06
LDLR-212ENST00000560467 LINS1Q8NG48 757 aa14.67□□□□□ -0.06
LDLR-212ENST00000560467 R3HDMLQ9H3Y0 253 aa14.67□□□□□ -0.06
LDLR-212ENST00000560467 MYO3BQ8WXR4 1341 aa14.66□□□□□ -0.06
LDLR-212ENST00000560467 GPR25O00155 361 aa14.66□□□□□ -0.06
LDLR-212ENST00000560467 NF2P35240 595 aa14.66□□□□□ -0.06
LDLR-212ENST00000560467 IGHMBP2P38935 993 aaKnown RBP14.66□□□□□ -0.06
LDLR-212ENST00000560467 C9orf78Q9NZ63 289 aaPredicted RBP14.66□□□□□ -0.06
LDLR-212ENST00000560467 FZD1Q9UP38 647 aa14.66□□□□□ -0.06
LDLR-212ENST00000560467 ZNF804BA4D1E1 1349 aa14.66□□□□□ -0.06
LDLR-212ENST00000560467 PSME4Q14997 1843 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 H7C1W4 665 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 ITGA6P23229 1130 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 TM4SF4P48230 202 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 TTLL5Q6EMB2 1281 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 APOBEC3FQ8IUX4 373 aaKnown RBP14.65□□□□□ -0.06
LDLR-212ENST00000560467 ZBED3Q96IU2 234 aaPredicted RBP14.65□□□□□ -0.06
LDLR-212ENST00000560467 RWDD1Q9H446 243 aaPredicted RBP14.65□□□□□ -0.06
LDLR-212ENST00000560467 LEMD3Q9Y2U8 911 aa14.65□□□□□ -0.06
LDLR-212ENST00000560467 SNAP23O00161 211 aa14.64□□□□□ -0.07
LDLR-212ENST00000560467 GTF2IP78347 998 aa14.64□□□□□ -0.07
LDLR-212ENST00000560467 PKN2Q16513 984 aaKnown RBP14.64□□□□□ -0.07
LDLR-212ENST00000560467 PRPF38BQ5VTL8 546 aaKnown RBP14.64□□□□□ -0.07
LDLR-212ENST00000560467 ARMC9Q7Z3E5 817 aa14.64□□□□□ -0.07
LDLR-212ENST00000560467 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.64□□□□□ -0.07
LDLR-212ENST00000560467 TNNQ9UQP3 1299 aa14.64□□□□□ -0.07
LDLR-212ENST00000560467 AKAP11Q9UKA4 1901 aa14.64□□□□□ -0.07
LDLR-212ENST00000560467 ZBTB7BO15156 539 aaPredicted RBP14.63□□□□□ -0.07
LDLR-212ENST00000560467 GNAI2P04899 355 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 UBTFL1P0CB47 393 aaPredicted RBP14.63□□□□□ -0.07
LDLR-212ENST00000560467 KCNJ4P48050 445 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 CASP7P55210 303 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 SREBF2Q12772 1141 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 GCKRQ14397 625 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 LDLRAD1Q5T700 205 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 PLA2G12BQ9BX93 195 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 ANKRD2Q9GZV1 360 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 ANGEL1Q9UNK9 670 aaKnown RBP14.63□□□□□ -0.07
LDLR-212ENST00000560467 PCDHAC2Q9Y5I4 1007 aa14.63□□□□□ -0.07
LDLR-212ENST00000560467 FKTNO75072 461 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 CHRNDQ07001 517 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 NOM1Q5C9Z4 860 aaKnown RBP14.62□□□□□ -0.07
LDLR-212ENST00000560467 BEND3Q5T5X7 828 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 SPRYD7Q5W111 196 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 FBXO46Q6PJ61 603 aaPredicted RBP14.62□□□□□ -0.07
LDLR-212ENST00000560467 CERS5Q8N5B7 392 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 MPHOSPH8Q99549 860 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 ZBTB40Q9NUA8 1239 aa14.62□□□□□ -0.07
LDLR-212ENST00000560467 ZNF646O15015 1829 aaPredicted RBP14.62□□□□□ -0.07
LDLR-212ENST00000560467 SSC5DA1L4H1 1573 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 HMMRO75330 724 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 HELBQ8NG08 1087 aaPredicted RBP14.61□□□□□ -0.07
LDLR-212ENST00000560467 CLMNQ96JQ2 1002 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 DEFB129Q9H1M3 183 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 CD209Q9NNX6 404 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 PCDH10Q9P2E7 1040 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 ZBTB47Q9UFB7 747 aaPredicted RBP14.61□□□□□ -0.07
LDLR-212ENST00000560467 AOX1Q06278 1338 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 IRS2Q9Y4H2 1338 aa14.61□□□□□ -0.07
LDLR-212ENST00000560467 F8W031 263 aaPredicted RBP14.6□□□□□ -0.07
LDLR-212ENST00000560467 TAF5LO75529 589 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 CSF1RP07333 972 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 MMP14P50281 582 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 DLGAP5Q15398 846 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 B4GALNT3Q6L9W6 998 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 RPAP2Q8IXW5 612 aaPredicted RBP14.6□□□□□ -0.07
LDLR-212ENST00000560467 CFHR5Q9BXR6 569 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 JAG2Q9Y219 1238 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 CACNA1FO60840 1977 aa14.6□□□□□ -0.07
LDLR-212ENST00000560467 SPEF2Q9C093 1822 aa14.59□□□□□ -0.07
LDLR-212ENST00000560467 CLRN2A0PK11 232 aa14.59□□□□□ -0.07
LDLR-212ENST00000560467 COL1A1P02452 1464 aaPredicted RBP14.58□□□□□ -0.08
LDLR-212ENST00000560467 ANKRD18BA2A2Z9 1011 aa14.58□□□□□ -0.08
LDLR-212ENST00000560467 GRM8O00222 908 aa14.58□□□□□ -0.08
LDLR-212ENST00000560467 IGF2BP3O00425 579 aaKnown RBP eCLIP14.58□□□□□ -0.08
LDLR-212ENST00000560467 CENPQQ7L2Z9 268 aaPredicted RBP14.58□□□□□ -0.08
LDLR-212ENST00000560467 IFNL1Q8IU54 200 aa14.58□□□□□ -0.08
LDLR-212ENST00000560467 SLC10A4Q96EP9 437 aa14.58□□□□□ -0.08
LDLR-212ENST00000560467 WNK4Q96J92 1243 aa14.58□□□□□ -0.08
LDLR-212ENST00000560467 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
LDLR-212ENST00000560467 MANSC4A6NHS7 340 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms