RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ZNF280AP59817 542 aaPredicted RBP16.02■□□□□ 0.16
NEDD8-208ENST00000560427 FSTL1Q12841 308 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 TNNI3KQ59H18 835 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 FBXW7Q969H0 707 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 KIF1BPQ96EK5 621 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 EXOC6BQ9Y2D4 811 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 FPGT-TNNI3KV9GXZ4 949 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 CCDC102BQ68D86 513 aa16.01■□□□□ 0.15
NEDD8-208ENST00000560427 OGFOD1Q8N543 542 aa16.01■□□□□ 0.15
NEDD8-208ENST00000560427 XAGE2Q96GT9 111 aa16.01■□□□□ 0.15
NEDD8-208ENST00000560427 TIMM10P62072 90 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 EAPPQ56P03 285 aaPredicted RBP16■□□□□ 0.15
NEDD8-208ENST00000560427 MFSD14BQ5SR56 506 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 RHPN1Q8TCX5 695 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 ZC3H15Q8WU90 426 aaKnown RBP16■□□□□ 0.15
NEDD8-208ENST00000560427 NEUROD6Q96NK8 337 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 HDAC9Q9UKV0 1011 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 DENND2AQ9ULE3 1009 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 SUGT1Q9Y2Z0 365 aa16■□□□□ 0.15
NEDD8-208ENST00000560427 ADORA1P30542 326 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 GORABQ5T7V8 394 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 CHADLQ6NUI6 762 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 CERS5Q8N5B7 392 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 WDR66Q8TBY9 1149 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 PCDHB15Q9Y5E8 787 aa15.99■□□□□ 0.15
NEDD8-208ENST00000560427 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.99■□□□□ 0.15
NEDD8-208ENST00000560427 SALL1Q9NSC2 1324 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 COL1A1P02452 1464 aaPredicted RBP15.98■□□□□ 0.15
NEDD8-208ENST00000560427 UQCRFS1P1P0C7P4 283 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 PHKA1P46020 1223 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 C1QTNF8P60827 252 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 KIF4BQ2VIQ3 1234 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 CLASRPQ8N2M8 674 aaKnown RBP15.98■□□□□ 0.15
NEDD8-208ENST00000560427 ZNF512BQ96KM6 892 aaPredicted RBP15.98■□□□□ 0.15
NEDD8-208ENST00000560427 DCTPP1Q9H773 170 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 MYOZ2Q9NPC6 264 aa15.98■□□□□ 0.15
NEDD8-208ENST00000560427 MAST3O60307 1309 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 ARID4AP29374 1257 aaPredicted RBP15.97■□□□□ 0.15
NEDD8-208ENST00000560427 HDAC1Q13547 482 aaPredicted RBP15.97■□□□□ 0.15
NEDD8-208ENST00000560427 CCDC158Q5M9N0 1113 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 KIAA0825Q8IV33 1275 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 ZGPATQ8N5A5 531 aaKnown RBP15.97■□□□□ 0.15
NEDD8-208ENST00000560427 TRPM4Q8TD43 1214 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 MXD3Q9BW11 206 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 PGAP2Q9UHJ9 254 aa15.97■□□□□ 0.15
NEDD8-208ENST00000560427 IQSEC3Q9UPP2 1182 aaPredicted RBP15.97■□□□□ 0.15
NEDD8-208ENST00000560427 MYH13Q9UKX3 1938 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 SHTN1A0MZ66 631 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 CHAF1AQ13111 956 aaPredicted RBP15.96■□□□□ 0.15
NEDD8-208ENST00000560427 RASGRF1Q13972 1273 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 SAMD7Q7Z3H4 446 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 AACSQ86V21 672 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 MTMR14Q8NCE2 650 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 EAF2Q96CJ1 260 aaPredicted RBP15.96■□□□□ 0.15
NEDD8-208ENST00000560427 DBNDD2Q9BQY9 259 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 LRRCC1Q9C099 1032 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 DBNLQ9UJU6 430 aaKnown RBP15.96■□□□□ 0.15
NEDD8-208ENST00000560427 CLEC11AQ9Y240 323 aa15.96■□□□□ 0.15
NEDD8-208ENST00000560427 IGSF3O75054 1194 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 POTEIP0CG38 1075 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 POTEJP0CG39 1038 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 HIRAP54198 1017 aaPredicted RBP15.95■□□□□ 0.14
NEDD8-208ENST00000560427 HDLBPQ00341 1268 aaKnown RBP15.95■□□□□ 0.14
NEDD8-208ENST00000560427 TBC1D10BQ4KMP7 808 aaPredicted RBP15.95■□□□□ 0.14
NEDD8-208ENST00000560427 EXOC6Q8TAG9 804 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 SERPINA10Q9UK55 444 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 JAG2Q9Y219 1238 aa15.95■□□□□ 0.14
NEDD8-208ENST00000560427 TTC39AQ5SRH9 613 aa15.94■□□□□ 0.14
NEDD8-208ENST00000560427 MRIQ9BWK5 157 aa15.94■□□□□ 0.14
NEDD8-208ENST00000560427 IL1RAPL2Q9NP60 686 aa15.94■□□□□ 0.14
NEDD8-208ENST00000560427 PITPNM2Q9BZ72 1349 aa15.94■□□□□ 0.14
NEDD8-208ENST00000560427 EGFRP00533 1210 aa15.93■□□□□ 0.14
NEDD8-208ENST00000560427 IFIT2P09913 472 aaKnown RBP15.93■□□□□ 0.14
NEDD8-208ENST00000560427 SPATA5Q8NB90 893 aa15.93■□□□□ 0.14
NEDD8-208ENST00000560427 GCC1Q96CN9 775 aa15.93■□□□□ 0.14
NEDD8-208ENST00000560427 ZBED3Q96IU2 234 aaPredicted RBP15.93■□□□□ 0.14
NEDD8-208ENST00000560427 CCDC8Q9H0W5 538 aaPredicted RBP15.93■□□□□ 0.14
NEDD8-208ENST00000560427 TTF2Q9UNY4 1162 aaKnown RBP15.93■□□□□ 0.14
NEDD8-208ENST00000560427 APBB1O00213 710 aa15.92■□□□□ 0.14
NEDD8-208ENST00000560427 WNT10BO00744 389 aa15.92■□□□□ 0.14
NEDD8-208ENST00000560427 CENPBP07199 599 aaPredicted RBP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 DLGAP5Q15398 846 aa15.92■□□□□ 0.14
NEDD8-208ENST00000560427 RBM26Q5T8P6 1007 aaKnown RBP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 SPTY2D1Q68D10 685 aaPredicted RBP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 CNTROBQ8N137 903 aa15.92■□□□□ 0.14
NEDD8-208ENST00000560427 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 RWDD1Q9H446 243 aaPredicted RBP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 TLR7Q9NYK1 1049 aaKnown RBP15.92■□□□□ 0.14
NEDD8-208ENST00000560427 HMG20BQ9P0W2 317 aa15.92■□□□□ 0.14
NEDD8-208ENST00000560427 SPDYE2BA6NHP3 402 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 F8W031 263 aaPredicted RBP15.91■□□□□ 0.14
NEDD8-208ENST00000560427 MYO1BO43795 1136 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 LDHBP07195 334 aaKnown RBP15.91■□□□□ 0.14
NEDD8-208ENST00000560427 SPDYE6P0CI01 402 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 MCAMP43121 646 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 SCARF1Q14162 830 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 MAP1SQ66K74 1059 aaPredicted RBP15.91■□□□□ 0.14
NEDD8-208ENST00000560427 CDC37L1Q7L3B6 337 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 TEKT1Q969V4 418 aa15.91■□□□□ 0.14
NEDD8-208ENST00000560427 DCPSQ96C86 337 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms