RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 RRP12Q5JTH9 1297 aaKnown RBP13.09□□□□□ -0.31
LDLR-208ENST00000558518 SARM1Q6SZW1 724 aa13.09□□□□□ -0.31
LDLR-208ENST00000558518 A0A0G2JS52 829 aa13.08□□□□□ -0.31
LDLR-208ENST00000558518 CAPN2P17655 700 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 FAM193AP78312 1265 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 RAD51AP2Q09MP3 1159 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 TAF7LQ5H9L4 462 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 RBM43Q6ZSC3 357 aaKnown RBP13.08□□□□□ -0.32
LDLR-208ENST00000558518 FMR1NBQ8N0W7 255 aaPredicted RBP13.08□□□□□ -0.32
LDLR-208ENST00000558518 WDR24Q96S15 920 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 COL15A1P39059 1388 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 TMEM131LA2VDJ0 1609 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 FOXN1O15353 648 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
LDLR-208ENST00000558518 PFKFB2O60825 505 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 GRAMD1CQ8IYS0 662 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 CNNM3Q8NE01 707 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 PAG1Q9NWQ8 432 aa13.08□□□□□ -0.32
LDLR-208ENST00000558518 PPP2R3AQ06190 1150 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 TTC5Q8N0Z6 440 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 ARFGAP3Q9NP61 516 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 PRC1O43663 620 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 PPARDQ03181 441 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 PI16Q6UXB8 463 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 ANKRD13DQ6ZTN6 518 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 ZBTB3Q9H5J0 574 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 RSPH14Q9UHP6 348 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 ERBB3P21860 1342 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 DENND2AQ9ULE3 1009 aa13.07□□□□□ -0.32
LDLR-208ENST00000558518 UBE2Q2LH0YL09 131 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 GCKRQ14397 625 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 MTF1Q14872 753 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 ZSCAN26Q16670 478 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 ADALQ6DHV7 355 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 ILDR1Q86SU0 546 aaPredicted RBP13.06□□□□□ -0.32
LDLR-208ENST00000558518 CMTR1Q8N1G2 835 aaKnown RBP13.06□□□□□ -0.32
LDLR-208ENST00000558518 LINC00301Q8NCQ3 95 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 ENGASEQ8NFI3 743 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 SUGCTQ9HAC7 445 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 OVOS2A0A0J9YW53 1432 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 NPHP4O75161 1426 aaPredicted RBP13.06□□□□□ -0.32
LDLR-208ENST00000558518 OVOS2Q6IE36 1432 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 KIF28PB7ZC32 967 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 HSPD1P10809 573 aaKnown RBP13.06□□□□□ -0.32
LDLR-208ENST00000558518 IL17RAQ96F46 866 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 CARMIL3Q8ND23 1372 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 ZNF609O15014 1411 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 DLC1Q96QB1 1528 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 NEURL1BA8MQ27 555 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 MYSM1Q5VVJ2 828 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 NAA16Q6N069 864 aaPredicted RBP13.06□□□□□ -0.32
LDLR-208ENST00000558518 TOGARAM2Q6ZUX3 1019 aa13.06□□□□□ -0.32
LDLR-208ENST00000558518 SASH3O75995 380 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 PDIA4P13667 645 aaKnown RBP13.05□□□□□ -0.32
LDLR-208ENST00000558518 NLRP12P59046 1061 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 KIF4BQ2VIQ3 1234 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 GPIHBP1Q8IV16 184 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 DHX58Q96C10 678 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 BAG1Q99933 345 aaPredicted RBP13.05□□□□□ -0.32
LDLR-208ENST00000558518 PPP2R2CQ9Y2T4 447 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 KCNA6P17658 529 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 CYP2C19P33261 490 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 FKBP15Q5T1M5 1219 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 ANO1Q5XXA6 986 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 WDHD1O75717 1129 aaPredicted RBP13.05□□□□□ -0.32
LDLR-208ENST00000558518 FDPSP14324 419 aaKnown RBP13.05□□□□□ -0.32
LDLR-208ENST00000558518 AFMP43652 599 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 TRDNQ13061 729 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 TRIM29Q14134 588 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 LRRC24Q50LG9 513 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 AKAP4Q5JQC9 854 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 STAMQ92783 540 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 PARD6BQ9BYG5 372 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 INCENPQ9NQS7 918 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 LCMT1Q9UIC8 334 aa13.05□□□□□ -0.32
LDLR-208ENST00000558518 ATP5JP18859 108 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 MYL5Q02045 173 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 KCNG4Q8TDN1 519 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 KCNB2Q92953 911 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 ZSCAN12O43309 604 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 H2AFXP16104 143 aaPredicted RBP13.04□□□□□ -0.32
LDLR-208ENST00000558518 PTPN12Q05209 780 aaKnown RBP13.04□□□□□ -0.32
LDLR-208ENST00000558518 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.04□□□□□ -0.32
LDLR-208ENST00000558518 USP42Q9H9J4 1324 aaKnown RBP13.04□□□□□ -0.32
LDLR-208ENST00000558518 KDRP35968 1356 aa13.04□□□□□ -0.32
LDLR-208ENST00000558518 A0A0U1RQJ8 604 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 TTC39AQ5SRH9 613 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 KBTBD3Q8NAB2 608 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 ATRIPQ8WXE1 791 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 PDE11AQ9HCR9 933 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 DDX21Q9NR30 783 aaKnown RBP eCLIP13.03□□□□□ -0.32
LDLR-208ENST00000558518 DIP2CQ9Y2E4 1556 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 MED23Q9ULK4 1368 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 M0R2C6 588 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 IDH1O75874 414 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 HMGB1P09429 215 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 CASP1P29466 404 aa13.03□□□□□ -0.32
LDLR-208ENST00000558518 IMMTQ16891 758 aaKnown RBP13.03□□□□□ -0.32
LDLR-208ENST00000558518 LEKR1Q6ZMV7 388 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms