RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 GOLPH3LQ9H4A5 285 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 ANO10Q9NW15 660 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 TOGARAM1Q9Y4F4 1720 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 RIC1Q4ADV7 1423 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 XIRP1Q702N8 1843 aaKnown RBP15.77■□□□□ 0.12
SHMT2-222ENST00000555774 A0A0G2JLW4 131 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 FOXP2O15409 715 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 FDPSP14324 419 aaKnown RBP15.77■□□□□ 0.12
SHMT2-222ENST00000555774 HSP90AB3PQ58FF7 597 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 ILDR1Q86SU0 546 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-222ENST00000555774 MRFAP1L1Q96HT8 127 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 NAP1L2Q9ULW6 460 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-222ENST00000555774 ATRNO75882 1429 aa15.77■□□□□ 0.12
SHMT2-222ENST00000555774 NWD2Q9ULI1 1742 aa15.77■□□□□ 0.11
SHMT2-222ENST00000555774 NEMFO60524 1076 aa15.77■□□□□ 0.11
SHMT2-222ENST00000555774 CEBPZQ03701 1054 aaKnown RBP15.77■□□□□ 0.11
SHMT2-222ENST00000555774 BRAPQ7Z569 592 aa15.77■□□□□ 0.11
SHMT2-222ENST00000555774 MRPS27Q92552 414 aaKnown RBP15.77■□□□□ 0.11
SHMT2-222ENST00000555774 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
SHMT2-222ENST00000555774 MAP3K15Q6ZN16 1313 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 PRC1O43663 620 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 YEATS4O95619 227 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 STARD3NLO95772 234 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 FGAP02671 866 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 ADALQ6DHV7 355 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 FSIP1Q8NA03 581 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 KCNG4Q8TDN1 519 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 ZAP70P43403 619 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 ME1P48163 572 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 TTF1Q15361 905 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-222ENST00000555774 ATP2B3Q16720 1220 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 RALYLQ86SE5 291 aaKnown RBP15.76■□□□□ 0.11
SHMT2-222ENST00000555774 POLR3EQ9NVU0 708 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 CLIP2Q9UDT6 1046 aa15.76■□□□□ 0.11
SHMT2-222ENST00000555774 FOSBP53539 338 aa15.75■□□□□ 0.11
SHMT2-222ENST00000555774 GIGYF2Q6Y7W6 1299 aaKnown RBP15.75■□□□□ 0.11
SHMT2-222ENST00000555774 CHST3Q7LGC8 479 aa15.75■□□□□ 0.11
SHMT2-222ENST00000555774 C8orf76Q96K31 380 aa15.75■□□□□ 0.11
SHMT2-222ENST00000555774 FTOQ9C0B1 505 aaKnown RBP eCLIP15.75■□□□□ 0.11
SHMT2-222ENST00000555774 NAT10Q9H0A0 1025 aaKnown RBP15.75■□□□□ 0.11
SHMT2-222ENST00000555774 KLF18A0A0U1RQI7 1052 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 ZNF213O14771 459 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 CEP57L1Q8IYX8 460 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 RIPOR2Q9Y4F9 1068 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 GOLGA8BA8MQT2 603 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 GPAA1O43292 621 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 C11orf57Q6ZUT1 292 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-222ENST00000555774 FMR1NBQ8N0W7 255 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-222ENST00000555774 LINC00301Q8NCQ3 95 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 FBXO18Q8NFZ0 1043 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 PCDHA7Q9UN72 937 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 HPS5Q9UPZ3 1129 aa15.74■□□□□ 0.11
SHMT2-222ENST00000555774 EVA1CP58658 441 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 SCARF1Q14162 830 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 METTL24Q5JXM2 366 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 DNAJC10Q8IXB1 793 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 FAM89AQ96GI7 184 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 PUS7LQ9H0K6 701 aaKnown RBP15.73■□□□□ 0.11
SHMT2-222ENST00000555774 BECN2A8MW95 431 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 ADD2P35612 726 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 ANTXR2P58335 489 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 GUCY1B3Q02153 619 aa15.73■□□□□ 0.11
SHMT2-222ENST00000555774 ORC3Q9UBD5 711 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-222ENST00000555774 ANKRD18BA2A2Z9 1011 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 CPLX1O14810 134 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 HAND2P61296 217 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 TRDNQ13061 729 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 STK38Q15208 465 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 UBE3CQ15386 1083 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 NLRP10Q86W26 655 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 BPIFA3Q9BQP9 254 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 CTSWP56202 376 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 SF3A1Q15459 793 aaKnown RBP15.72■□□□□ 0.11
SHMT2-222ENST00000555774 MYSM1Q5VVJ2 828 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 DHX40Q8IX18 779 aaKnown RBP15.72■□□□□ 0.11
SHMT2-222ENST00000555774 TTLL11Q8NHH1 800 aa15.72■□□□□ 0.11
SHMT2-222ENST00000555774 LRP6O75581 1613 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 MYH7P12883 1935 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 CDKL5O76039 1030 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 ITGA6P23229 1130 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 MCAMP43121 646 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 LDHAL6AQ6ZMR3 332 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 PIGBQ92521 554 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 GPHNQ9NQX3 736 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-222ENST00000555774 STRN4Q9NRL3 753 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 SLAIN2Q9P270 581 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 NRBP1Q9UHY1 535 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 ZMYM6O95789 1325 aa15.71■□□□□ 0.11
SHMT2-222ENST00000555774 UQCRFS1P1P0C7P4 283 aa15.71■□□□□ 0.1
SHMT2-222ENST00000555774 VGLL2Q8N8G2 317 aa15.71■□□□□ 0.1
SHMT2-222ENST00000555774 ZNF330Q9Y3S2 320 aaPredicted RBP15.71■□□□□ 0.1
SHMT2-222ENST00000555774 LRP5O75197 1615 aa15.7■□□□□ 0.1
SHMT2-222ENST00000555774 SPTLC2O15270 562 aa15.7■□□□□ 0.1
SHMT2-222ENST00000555774 LRMPQ12912 555 aa15.7■□□□□ 0.1
SHMT2-222ENST00000555774 CACTINQ8WUQ7 758 aaKnown RBP15.7■□□□□ 0.1
SHMT2-222ENST00000555774 ANGEL1Q9UNK9 670 aaKnown RBP15.7■□□□□ 0.1
SHMT2-222ENST00000555774 ANKRD36CQ5JPF3 1778 aa15.7■□□□□ 0.1
SHMT2-222ENST00000555774 RIOK3O14730 519 aaKnown RBP15.69■□□□□ 0.1
SHMT2-222ENST00000555774 CTIFO43310 598 aaKnown RBP15.69■□□□□ 0.1
SHMT2-222ENST00000555774 ARID4AP29374 1257 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms