RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ZBED3Q96IU2 234 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 GGA3Q9NZ52 723 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 PCDH10Q9P2E7 1040 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 TLL2Q9Y6L7 1015 aa12.85□□□□□ -0.35
CCDC88C-206ENST00000553437 ADM5C9JUS6 153 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 FKBP1AP62942 108 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 MTX1Q13505 466 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 DEFB115Q30KQ5 88 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 NBPF9Q3BBW0 867 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 ANGEL2Q5VTE6 544 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 KIAA0825Q8IV33 1275 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 OGFOD1Q8N543 542 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 TMEM57Q8N5G2 664 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 FBXO3Q9UK99 471 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 ABT1Q9ULW3 272 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 FAM205AQ6ZU69 1335 aa12.84□□□□□ -0.35
CCDC88C-206ENST00000553437 WNT10BO00744 389 aa12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 CIAO1O76071 339 aa12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 SAPCD2Q86UD0 394 aa12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 COPRSQ9NQ92 184 aa12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 PA2G4Q9UQ80 394 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 JAG2Q9Y219 1238 aa12.83□□□□□ -0.36
CCDC88C-206ENST00000553437 RLBP1P12271 317 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 PUM3Q15397 648 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 SULF1Q8IWU6 871 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 SIL1Q9H173 461 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 ZNF408Q9H9D4 720 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 HDAC9Q9UKV0 1011 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 PITPNM2Q9BZ72 1349 aa12.82□□□□□ -0.36
CCDC88C-206ENST00000553437 GNAI2P04899 355 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 BCAMP50895 628 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 MTMR14Q8NCE2 650 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 LPIN2Q92539 896 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 HHIPL1Q96JK4 782 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 WDR33Q9C0J8 1336 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 A0A1B0GUL6 1792 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 ZNF646O15015 1829 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 PSME4Q14997 1843 aa12.81□□□□□ -0.36
CCDC88C-206ENST00000553437 SRGAP3O43295 1099 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 IFIT1P09914 478 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 HSPA1AP0DMV8 641 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 HSPA1BP0DMV9 641 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 IL15P40933 162 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 CAVIN4Q5BKX8 364 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 CYP4F22Q6NT55 531 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 CDCA5Q96FF9 252 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 CAPNS2Q96L46 248 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 CEP126Q9P2H0 1117 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 SCAF8Q9UPN6 1271 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 IQSEC3Q9UPP2 1182 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 PCDHAC2Q9Y5I4 1007 aa12.8□□□□□ -0.36
CCDC88C-206ENST00000553437 F8W031 263 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 ZBTB7BO15156 539 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 DLGAP5Q15398 846 aa12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 GRIK5Q16478 980 aa12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 MFSD14BQ5SR56 506 aa12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 VPS37DQ86XT2 251 aa12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 GBA2Q9HCG7 927 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 AOX1Q06278 1338 aa12.79□□□□□ -0.36
CCDC88C-206ENST00000553437 PNMA6EA0A0J9YXQ4 647 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 SLC5A1P13866 664 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 ATP2B3Q16720 1220 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 CFAP100Q494V2 611 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 PRAMEF18Q5VWM3 479 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 PRMT6Q96LA8 375 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 WBP1LQ9NX94 342 aa12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-206ENST00000553437 SPDYE2BA6NHP3 402 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 SPDYE6P0CI01 402 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 ECE1P42892 770 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 HUNKP57058 714 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 CHAF1AQ13111 956 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 POLA2Q14181 598 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 C2orf69Q8N8R5 385 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 SERPINA10Q9UK55 444 aa12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 TTF2Q9UNY4 1162 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-206ENST00000553437 ZBTB22O15209 634 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 AOC2O75106 756 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 ADORA1P30542 326 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 ATP8B2P98198 1209 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 TFCP2Q12800 502 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 PAXIP1Q6ZW49 1069 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 APOBEC3FQ8IUX4 373 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 ITPRIPQ8IWB1 547 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 PANK1Q8TE04 598 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 TBC1D22AQ8WUA7 517 aa12.76□□□□□ -0.37
CCDC88C-206ENST00000553437 FRAT2O75474 233 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 MAP2K2P36507 400 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 TIMM10P62072 90 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 GRM1Q13255 1194 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 SSH3Q8TE77 659 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 C1orf115Q9H7X2 142 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 RCAN3Q9UKA8 241 aa12.75□□□□□ -0.37
CCDC88C-206ENST00000553437 COL1A1P02452 1464 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 A0A1B0GUL7 405 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 CLRN2A0PK11 232 aa12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 FAM155AB1AL88 458 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-206ENST00000553437 FOXN1O15353 648 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms