RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 EXOC6BQ9Y2D4 811 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 NOP58Q9Y2X3 529 aaKnown RBP16.54■□□□□ 0.24
VPS28-210ENST00000529182 FRAT2O75474 233 aaPredicted RBP16.53■□□□□ 0.24
VPS28-210ENST00000529182 USP17L8P0C7I0 530 aa16.53■□□□□ 0.24
VPS28-210ENST00000529182 FSTL1Q12841 308 aa16.53■□□□□ 0.24
VPS28-210ENST00000529182 CHAF1AQ13111 956 aaPredicted RBP16.53■□□□□ 0.24
VPS28-210ENST00000529182 MAP1SQ66K74 1059 aaPredicted RBP16.53■□□□□ 0.24
VPS28-210ENST00000529182 KIAA0825Q8IV33 1275 aa16.53■□□□□ 0.24
VPS28-210ENST00000529182 FAM205AQ6ZU69 1335 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 MYO3BQ8WXR4 1341 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 PHKA1P46020 1223 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 ZNF280AP59817 542 aaPredicted RBP16.52■□□□□ 0.24
VPS28-210ENST00000529182 KIF4BQ2VIQ3 1234 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 NEUROD6Q96NK8 337 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 AKAP2Q9Y2D5 859 aa16.52■□□□□ 0.24
VPS28-210ENST00000529182 SUPT16HQ9Y5B9 1047 aaKnown RBP16.52■□□□□ 0.24
VPS28-210ENST00000529182 F8W031 263 aaPredicted RBP16.51■□□□□ 0.23
VPS28-210ENST00000529182 XAGE2Q96GT9 111 aa16.51■□□□□ 0.23
VPS28-210ENST00000529182 MYOZ2Q9NPC6 264 aa16.51■□□□□ 0.23
VPS28-210ENST00000529182 ASTN2O75129 1339 aaPredicted RBP16.5■□□□□ 0.23
VPS28-210ENST00000529182 COL1A1P02452 1464 aaPredicted RBP16.5■□□□□ 0.23
VPS28-210ENST00000529182 HMMRO75330 724 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 TNNI3KQ59H18 835 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 MFSD14BQ5SR56 506 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 CCDC102BQ68D86 513 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 CNTROBQ8N137 903 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 FPGT-TNNI3KV9GXZ4 949 aa16.5■□□□□ 0.23
VPS28-210ENST00000529182 CEP350Q5VT06 3117 aa16.49■□□□□ 0.23
VPS28-210ENST00000529182 APBB1O00213 710 aa16.49■□□□□ 0.23
VPS28-210ENST00000529182 GRIK5Q16478 980 aa16.49■□□□□ 0.23
VPS28-210ENST00000529182 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
VPS28-210ENST00000529182 ARAP2Q8WZ64 1704 aa16.49■□□□□ 0.23
VPS28-210ENST00000529182 ITGBL1O95965 494 aaPredicted RBP16.48■□□□□ 0.23
VPS28-210ENST00000529182 HSPA6P17066 643 aa16.48■□□□□ 0.23
VPS28-210ENST00000529182 FKBP1AP62942 108 aaKnown RBP16.48■□□□□ 0.23
VPS28-210ENST00000529182 FMR1Q06787 632 aaKnown RBP eCLIP16.48■□□□□ 0.23
VPS28-210ENST00000529182 GNL3LQ9NVN8 582 aaKnown RBP16.48■□□□□ 0.23
VPS28-210ENST00000529182 PGAP2Q9UHJ9 254 aa16.48■□□□□ 0.23
VPS28-210ENST00000529182 PCDHB15Q9Y5E8 787 aa16.48■□□□□ 0.23
VPS28-210ENST00000529182 PCDHAC2Q9Y5I4 1007 aa16.48■□□□□ 0.23
VPS28-210ENST00000529182 HTRA3P83110 453 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 SCARF1Q14162 830 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 NBPF9Q3BBW0 867 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 GORABQ5T7V8 394 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 ZC3H15Q8WU90 426 aaKnown RBP16.47■□□□□ 0.23
VPS28-210ENST00000529182 DBNDD2Q9BQY9 259 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 GLIS2Q9BZE0 524 aaPredicted RBP16.47■□□□□ 0.23
VPS28-210ENST00000529182 CCDC8Q9H0W5 538 aaPredicted RBP16.47■□□□□ 0.23
VPS28-210ENST00000529182 BCL11AQ9H165 835 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 IL1RAPL2Q9NP60 686 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 GPR108Q9NPR9 543 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 TLR7Q9NYK1 1049 aaKnown RBP16.47■□□□□ 0.23
VPS28-210ENST00000529182 HDAC9Q9UKV0 1011 aa16.47■□□□□ 0.23
VPS28-210ENST00000529182 PASKQ96RG2 1323 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 TRAF5O00463 557 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 HSP90AB4PQ58FF6 505 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 DLK2Q6UY11 383 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 RHPN1Q8TCX5 695 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 EAF2Q96CJ1 260 aaPredicted RBP16.46■□□□□ 0.23
VPS28-210ENST00000529182 GGA3Q9NZ52 723 aa16.46■□□□□ 0.23
VPS28-210ENST00000529182 TTF2Q9UNY4 1162 aaKnown RBP16.46■□□□□ 0.23
VPS28-210ENST00000529182 WNT10BO00744 389 aa16.45■□□□□ 0.22
VPS28-210ENST00000529182 ANGEL2Q5VTE6 544 aaKnown RBP16.45■□□□□ 0.22
VPS28-210ENST00000529182 ERC1Q8IUD2 1116 aa16.45■□□□□ 0.22
VPS28-210ENST00000529182 EXOC6Q8TAG9 804 aa16.45■□□□□ 0.22
VPS28-210ENST00000529182 TBC1D22AQ8WUA7 517 aa16.45■□□□□ 0.22
VPS28-210ENST00000529182 DENND2AQ9ULE3 1009 aa16.45■□□□□ 0.22
VPS28-210ENST00000529182 SCAF8Q9UPN6 1271 aaKnown RBP16.45■□□□□ 0.22
VPS28-210ENST00000529182 SEMA3EO15041 775 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 APLP1P51693 650 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 IRX6P78412 446 aaPredicted RBP16.44■□□□□ 0.22
VPS28-210ENST00000529182 CFAP100Q494V2 611 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 PI16Q6UXB8 463 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 USP48Q86UV5 1035 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 AACSQ86V21 672 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 WDR66Q8TBY9 1149 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 KIF1BPQ96EK5 621 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 ZBED3Q96IU2 234 aaPredicted RBP16.44■□□□□ 0.22
VPS28-210ENST00000529182 DBNLQ9UJU6 430 aaKnown RBP16.44■□□□□ 0.22
VPS28-210ENST00000529182 AOX1Q06278 1338 aa16.44■□□□□ 0.22
VPS28-210ENST00000529182 MYH13Q9UKX3 1938 aa16.43■□□□□ 0.22
VPS28-210ENST00000529182 ADM5C9JUS6 153 aa16.43■□□□□ 0.22
VPS28-210ENST00000529182 MMP14P50281 582 aa16.43■□□□□ 0.22
VPS28-210ENST00000529182 RBM5P52756 815 aaKnown RBP eCLIP16.43■□□□□ 0.22
VPS28-210ENST00000529182 DLGAP5Q15398 846 aa16.43■□□□□ 0.22
VPS28-210ENST00000529182 DCPSQ96C86 337 aaKnown RBP16.43■□□□□ 0.22
VPS28-210ENST00000529182 HMG20BQ9P0W2 317 aa16.43■□□□□ 0.22
VPS28-210ENST00000529182 RAB11FIP3O75154 756 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 ARID4AP29374 1257 aaPredicted RBP16.42■□□□□ 0.22
VPS28-210ENST00000529182 PRDX5P30044 214 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 MCAMP43121 646 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 CRKP46108 304 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 TTC39AQ5SRH9 613 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 CDC37L1Q7L3B6 337 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 KRT26Q7Z3Y9 468 aa16.42■□□□□ 0.22
VPS28-210ENST00000529182 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
VPS28-210ENST00000529182 SPDYE2BA6NHP3 402 aa16.41■□□□□ 0.22
VPS28-210ENST00000529182 SMARCA5O60264 1052 aaPredicted RBP16.41■□□□□ 0.22
VPS28-210ENST00000529182 SPDYE6P0CI01 402 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms