RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 APPBP2Q92624 585 aa25.27■■□□□ 1.64
VPS28-208ENST00000527797 ADD2P35612 726 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 UBE3CQ15386 1083 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 PRPF40BQ6NWY9 871 aaKnown RBP25.26■■□□□ 1.63
VPS28-208ENST00000527797 ANAPC15P60006 121 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 CCDC129Q6ZRS4 1044 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 MAP4K1Q92918 833 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 GPR101Q96P66 508 aaPredicted RBP25.26■■□□□ 1.63
VPS28-208ENST00000527797 LRP2BPQ9P2M1 347 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 LRRC37AA6NMS7 1700 aa25.26■■□□□ 1.63
VPS28-208ENST00000527797 PDE6AP16499 860 aa25.25■■□□□ 1.63
VPS28-208ENST00000527797 DPP8Q6V1X1 898 aaPredicted RBP25.25■■□□□ 1.63
VPS28-208ENST00000527797 OSBP2Q969R2 916 aa25.25■■□□□ 1.63
VPS28-208ENST00000527797 MAST3O60307 1309 aa25.25■■□□□ 1.63
VPS28-208ENST00000527797 RABEP1Q15276 862 aa25.24■■□□□ 1.63
VPS28-208ENST00000527797 TDRD7Q8NHU6 1098 aaKnown RBP25.24■■□□□ 1.63
VPS28-208ENST00000527797 COL1A1P02452 1464 aaPredicted RBP25.24■■□□□ 1.63
VPS28-208ENST00000527797 BECN1Q14457 450 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 OLFM4Q6UX06 510 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 ABCF2Q9UG63 623 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 WWC3Q9ULE0 1092 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 ZNF532Q9HCE3 1301 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 M0R2C6 588 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 DAXXQ9UER7 740 aaPredicted RBP25.23■■□□□ 1.63
VPS28-208ENST00000527797 PALD1Q9ULE6 856 aa25.23■■□□□ 1.63
VPS28-208ENST00000527797 RBM8AQ9Y5S9 174 aaKnown RBP25.23■■□□□ 1.63
VPS28-208ENST00000527797 CHAF1AQ13111 956 aaPredicted RBP25.22■■□□□ 1.63
VPS28-208ENST00000527797 MAGEB6Q8N7X4 407 aa25.22■■□□□ 1.63
VPS28-208ENST00000527797 CD209Q9NNX6 404 aa25.22■■□□□ 1.63
VPS28-208ENST00000527797 NECTIN1Q15223 517 aa25.21■■□□□ 1.63
VPS28-208ENST00000527797 IL17RAQ96F46 866 aa25.21■■□□□ 1.63
VPS28-208ENST00000527797 PUS7LQ9H0K6 701 aaKnown RBP25.21■■□□□ 1.63
VPS28-208ENST00000527797 RAI14Q9P0K7 980 aa25.21■■□□□ 1.63
VPS28-208ENST00000527797 TCRBV5S4A2TA0A5A2 114 aa25.2■■□□□ 1.62
VPS28-208ENST00000527797 PSDA5PKW4 1024 aaPredicted RBP25.2■■□□□ 1.62
VPS28-208ENST00000527797 CC2D2BQ6DHV5 1058 aa25.2■■□□□ 1.62
VPS28-208ENST00000527797 EYA3Q99504 573 aa25.2■■□□□ 1.62
VPS28-208ENST00000527797 DSCC1Q9BVC3 393 aa25.2■■□□□ 1.62
VPS28-208ENST00000527797 U3KPZ7 1027 aaPredicted RBP25.2■■□□□ 1.62
VPS28-208ENST00000527797 IL1R1P14778 569 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 DPEP1P16444 411 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 TTLL6Q8N841 843 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 WDR66Q8TBY9 1149 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 ZC3H12CQ9C0D7 883 aaKnown RBP25.19■■□□□ 1.62
VPS28-208ENST00000527797 LTBP1Q14766 1721 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 A0A0G2JLW4 131 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 TGFB2P61812 414 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 RNF20Q5VTR2 975 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 ERICH6Q7L0X2 663 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 C7orf43Q8WVR3 580 aa25.19■■□□□ 1.62
VPS28-208ENST00000527797 ZNF219Q9P2Y4 722 aaPredicted RBP25.19■■□□□ 1.62
VPS28-208ENST00000527797 RIMBP2O15034 1052 aa25.18■■□□□ 1.62
VPS28-208ENST00000527797 ZGPATQ8N5A5 531 aaKnown RBP25.18■■□□□ 1.62
VPS28-208ENST00000527797 KCNB2Q92953 911 aa25.18■■□□□ 1.62
VPS28-208ENST00000527797 SNX21Q969T3 373 aa25.18■■□□□ 1.62
VPS28-208ENST00000527797 COA1Q9GZY4 146 aa25.18■■□□□ 1.62
VPS28-208ENST00000527797 SNX14Q9Y5W7 946 aa25.18■■□□□ 1.62
VPS28-208ENST00000527797 GPAA1O43292 621 aa25.17■■□□□ 1.62
VPS28-208ENST00000527797 HSPD1P10809 573 aaKnown RBP25.17■■□□□ 1.62
VPS28-208ENST00000527797 ZKSCAN1P17029 563 aaPredicted RBP25.17■■□□□ 1.62
VPS28-208ENST00000527797 CREB3L3Q68CJ9 461 aa25.17■■□□□ 1.62
VPS28-208ENST00000527797 SPTY2D1Q68D10 685 aaPredicted RBP25.17■■□□□ 1.62
VPS28-208ENST00000527797 SALL1Q9NSC2 1324 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 IGSF3O75054 1194 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 KCNA3P22001 575 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 VPS53Q5VIR6 699 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 RASEFQ8IZ41 740 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 TBC1D2Q9BYX2 928 aa25.16■■□□□ 1.62
VPS28-208ENST00000527797 DOCK2Q92608 1830 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 CYP7A1P22680 504 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 GRIPAP1Q4V328 841 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 HSCBQ8IWL3 235 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 AIDAQ96BJ3 306 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 SLC27A2O14975 620 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 TMED8Q6PL24 325 aaPredicted RBP25.15■■□□□ 1.62
VPS28-208ENST00000527797 SGIP1Q9BQI5 828 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 RTFDC1Q9BY42 306 aaPredicted RBP25.15■■□□□ 1.62
VPS28-208ENST00000527797 JAG2Q9Y219 1238 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 DUOX1Q9NRD9 1551 aa25.15■■□□□ 1.62
VPS28-208ENST00000527797 SLX4Q8IY92 1834 aa25.14■■□□□ 1.62
VPS28-208ENST00000527797 NAA16Q6N069 864 aaPredicted RBP25.14■■□□□ 1.61
VPS28-208ENST00000527797 IL27Q8NEV9 243 aa25.14■■□□□ 1.61
VPS28-208ENST00000527797 MYH7P12883 1935 aa25.14■■□□□ 1.61
VPS28-208ENST00000527797 G3V3G9 751 aa25.13■■□□□ 1.61
VPS28-208ENST00000527797 C21orf2O43822 256 aa25.13■■□□□ 1.61
VPS28-208ENST00000527797 ST18O60284 1047 aa25.13■■□□□ 1.61
VPS28-208ENST00000527797 SLC4A3P48751 1232 aa25.13■■□□□ 1.61
VPS28-208ENST00000527797 DCAF8Q5TAQ9 597 aa25.13■■□□□ 1.61
VPS28-208ENST00000527797 SUPT20HQ8NEM7 779 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 STRBPQ96SI9 672 aaKnown RBP25.12■■□□□ 1.61
VPS28-208ENST00000527797 PIM2Q9P1W9 311 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 CTNNA3Q9UI47 895 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 KIF13BQ9NQT8 1826 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 MBD4O95243 580 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 PRDX5P30044 214 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 NEK4P51957 841 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 MECOMQ03112 1051 aa25.12■■□□□ 1.61
VPS28-208ENST00000527797 NSUN4Q96CB9 384 aaKnown RBP25.12■■□□□ 1.61
VPS28-208ENST00000527797 DLEC1Q9Y238 1755 aa25.11■■□□□ 1.61
VPS28-208ENST00000527797 LDHBP07195 334 aaKnown RBP25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms