RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 PTPRCP08575 1304 aa3.66□□□□□ -1.82
MCF2-208ENST00000519895 ZBTB7CA1YPR0 619 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 BTBD11A6QL63 1104 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 RIPK4P57078 832 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 TMED8Q6PL24 325 aaPredicted RBP3.65□□□□□ -1.82
MCF2-208ENST00000519895 WWC1Q8IX03 1113 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 GAS2L1Q99501 681 aaPredicted RBP3.65□□□□□ -1.82
MCF2-208ENST00000519895 UTYO14607 1347 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 BDP1A6H8Y1 2624 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 KIAA0100Q14667 2235 aaKnown RBP3.65□□□□□ -1.82
MCF2-208ENST00000519895 CARMIL3Q8ND23 1372 aa3.65□□□□□ -1.82
MCF2-208ENST00000519895 APBB1O00213 710 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 CHRM1P11229 460 aaPredicted RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 TIE1P35590 1138 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 GSE1Q14687 1217 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 MIER1Q8N108 512 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 LINC00116Q8NCU8 138 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 NYXQ9GZU5 481 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 RTCBQ9Y3I0 505 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 GOLGB1Q14789 3259 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 ANKRD31Q8N7Z5 1873 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 LCHNA4D1U4 455 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 U2SURPO15042 1029 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 PDIA4P13667 645 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 STYK1Q6J9G0 422 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 NBPF10Q6P3W6 841 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 TICAM2Q86XR7 235 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 NANOS1Q8WY41 292 aaKnown RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 RMDN1Q96DB5 314 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 DBF4Q9UBU7 674 aaPredicted RBP3.65□□□□□ -1.83
MCF2-208ENST00000519895 PSME4Q14997 1843 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 AOX1Q06278 1338 aa3.65□□□□□ -1.83
MCF2-208ENST00000519895 MYH3P11055 1940 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 EPG5Q9HCE0 2579 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 RIOK3O14730 519 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 PROS1P07225 676 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 MS4A1P11836 297 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 SLFN5Q08AF3 891 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 ITPK1Q13572 414 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 NBPF20Q3BBV1 942 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 TRAPPC3LQ5T215 181 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 CCDC30Q5VVM6 783 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 ZNF34Q8IZ26 560 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 LTV1Q96GA3 475 aaPredicted RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 SLC4A9Q96Q91 983 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 TRAIPQ9BWF2 469 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 CHMP4BQ9H444 224 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 MAP3K15Q6ZN16 1313 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 SALL1Q9NSC2 1324 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 MAST2Q6P0Q8 1798 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 SNED1Q8TER0 1413 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 COL4A6Q14031 1691 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 ALDH1L1O75891 902 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 CAMTA2O94983 1202 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 HOXA10P31260 410 aaPredicted RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 ATP6V1AP38606 617 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 CRKLP46109 303 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 MKRN3Q13064 507 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 LRRC41Q15345 812 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 USHBP1Q8N6Y0 703 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 NFATC2IPQ8NCF5 419 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 PLBD2Q8NHP8 589 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 DDX54Q8TDD1 881 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 ARHGEF1Q92888 912 aaKnown RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 LGR6Q9HBX8 967 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 KIF16BQ96L93 1317 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 TESPA1A2RU30 521 aaPredicted RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 MAP3K13O43283 966 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 POU3F3P20264 500 aaPredicted RBP3.64□□□□□ -1.83
MCF2-208ENST00000519895 PDIA6Q15084 440 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 HERVK_113Q902F9 699 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 ISCA1Q9BUE6 129 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 SEMA4AQ9H3S1 761 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 MRS2Q9HD23 443 aa3.64□□□□□ -1.83
MCF2-208ENST00000519895 TCF20Q9UGU0 1960 aaKnown RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 DDX58O95786 925 aaKnown RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 GYS1P13807 737 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 FBLN1P23142 703 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 SHC2P98077 582 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 MDM2Q00987 491 aaPredicted RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 GOLGA2Q08379 1002 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 CRY2Q49AN0 593 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 GIGYF2Q6Y7W6 1299 aaKnown RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 C15orf52Q6ZUT6 534 aaKnown RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 ZNF496Q96IT1 587 aaPredicted RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 CRAMP1Q96RY5 1269 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 ASAP1Q9ULH1 1129 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 ARAP2Q8WZ64 1704 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 A0A1B0GUL6 1792 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 CEP290O15078 2479 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 ZNF292O60281 2723 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 STK25O00506 426 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 PPM1GO15355 546 aaPredicted RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 HMOX1P09601 288 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 MPRIPQ6WCQ1 1025 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 KDF1Q8NAX2 398 aaPredicted RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 POLR3GLQ9BT43 218 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 BRIP1Q9BX63 1249 aa3.63□□□□□ -1.83
MCF2-208ENST00000519895 COL11A2P13942 1736 aaPredicted RBP3.63□□□□□ -1.83
MCF2-208ENST00000519895 DCXO43602 365 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 836.5 ms