RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 VAV3Q9UKW4 847 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 IQSEC3Q9UPP2 1182 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 AMOTL2Q9Y2J4 779 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 RTCBQ9Y3I0 505 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SNX11Q9Y5W9 270 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SYNGAP1Q96PV0 1343 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TCAF2A6NFQ2 919 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L15C9J2P7 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L10C9JJH3 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L13C9JLJ4 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L12C9JPN9 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L11C9JVI0 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L21D6R901 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L18D6R9N7 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L22D6RA61 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L17D6RBQ6 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L19D6RCP7 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L20D6RJB6 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM229AH3BQW9 127 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 LINC01387J3KSC0 135 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PDE2AO00408 941 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PHACTR2O75167 634 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SASH1O94885 1247 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 BRD1O95696 1058 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 APPP05067 770 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 RLBP1P12271 317 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TARSP26639 723 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 MZF1P28698 734 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 GRNP28799 593 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 NOS3P29474 1203 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 INPP5BP32019 993 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZAP70P43403 619 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ATP2B2Q01814 1243 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 GSTM4Q03013 218 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNA1Q09470 495 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP17L24Q0WX57 530 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 DPYDQ12882 1025 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 UBAP2LQ14157 1087 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ELOAQ14241 798 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PDE3AQ14432 1141 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PLCL1Q15111 1095 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 POU4F3Q15319 338 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNMB1Q16558 191 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 IFI16Q16666 785 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM67Q5HYA8 995 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PERM1Q5SV97 790 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SCARA3Q6AZY7 606 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM132EQ6IEE7 984 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 POTEAQ6S8J7 498 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 XKR5Q6UX68 686 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 C1orf229Q6ZS94 237 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZC3HAV1Q7Z2W4 902 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 RAB44Q7Z6P3 723 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ATG4DQ86TL0 474 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SPPL2CQ8IUH8 684 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 DEPDC4Q8N2C3 294 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 NLGN1Q8N2Q7 840 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 FNBP4Q8N3X1 1017 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBXL6Q8N531 539 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 OXR1Q8N573 874 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 POU5F2Q8N7G0 328 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TSEN2Q8NCE0 465 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SMG8Q8ND04 991 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 OR13H1Q8NG92 308 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 NETO1Q8TDF5 533 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMC1Q8TDI8 760 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 FOXD4L4Q8WXT5 416 aaPredicted RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC7A3Q8WY07 619 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 GLMNQ92990 594 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLUAP1Q96AJ1 413 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ACSBG1Q96GR2 724 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 HRASLS5Q96KN8 279 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC30A3Q99726 388 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 LPIN3Q9BQK8 851 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 USP26Q9BXU7 913 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPP1R12CQ9BZL4 782 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 CEP44Q9C0F1 390 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SRCIN1Q9C0H9 1055 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 LACRTQ9GZZ8 138 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 C7orf69Q9H7B7 122 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 ELP3Q9H9T3 547 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 TFIP11Q9UBB9 837 aaKnown RBP0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 BRPF3Q9ULD4 1205 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 COG6Q9Y2V7 657 aa0.88□□□□□ -2.27
RNU4-54P-201ENST00000516428 SSU72P8A0A1W2PR75 194 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 LRRC10BA6NIK2 292 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM155AB1AL88 458 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ABLIM1O14639 778 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 GIPC1O14908 333 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 RNGTTO60942 597 aaKnown RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIF4AO95239 1232 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 IGHA2P01877 340 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRNPP04156 253 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 WEE1P30291 646 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ARL4AP40617 200 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 ASPAP45381 313 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLCN7P51798 805 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 EPHA4P54764 986 aa0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 MLLT1Q03111 559 aaPredicted RBP0.87□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRKCQQ04759 706 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms