RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SH2B1Q9NRF2 756 aaPredicted RBP3.87□□□□□ -1.79
HMGB1-208ENST00000490788 ZBTB7CA1YPR0 619 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 H3BRJ5 948 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 EIF1AYO14602 144 aaKnown RBP3.86□□□□□ -1.79
HMGB1-208ENST00000490788 GPR182O15218 404 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 EIF4EBP3O60516 100 aaPredicted RBP3.86□□□□□ -1.79
HMGB1-208ENST00000490788 TRPA1O75762 1119 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 ACPPP15309 386 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 MAPK8P45983 427 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 IKBKEQ14164 716 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 IGF2-ASQ6U949 168 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 GALNT12Q8IXK2 581 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 KLHL23Q8NBE8 558 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 DDX54Q8TDD1 881 aaKnown RBP3.86□□□□□ -1.79
HMGB1-208ENST00000490788 BSNDQ8WZ55 320 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 ALKBH8Q96BT7 664 aaKnown RBP3.86□□□□□ -1.79
HMGB1-208ENST00000490788 CSRNP1Q96S65 589 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 LIN7BQ9HAP6 207 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 NPHS2Q9NP85 383 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 SEC31BQ9NQW1 1179 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 TRAK1Q9UPV9 953 aa3.86□□□□□ -1.79
HMGB1-208ENST00000490788 PNMA6FA0A0J9YX94 578 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 FSCN2O14926 492 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 EPHA1P21709 976 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 CD68P34810 354 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-208ENST00000490788 PIP4K2BP78356 416 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 FGD1P98174 961 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 LCE5AQ5TCM9 118 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 SND1Q7KZF4 910 aaKnown RBP eCLIP3.85□□□□□ -1.79
HMGB1-208ENST00000490788 WNT8BQ93098 351 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 NXPE3Q969Y0 559 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 CCDC74AQ96AQ1 378 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 LENG1Q96BZ8 264 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-208ENST00000490788 ASB16Q96NS5 453 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 CARD10Q9BWT7 1032 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 ADAM19Q9H013 955 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 MRPL18Q9H0U6 180 aaKnown RBP3.85□□□□□ -1.79
HMGB1-208ENST00000490788 LATS2Q9NRM7 1088 aa3.85□□□□□ -1.79
HMGB1-208ENST00000490788 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-208ENST00000490788 A0A1W2PP55 124 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 TREHO43280 583 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 DEAF1O75398 565 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-208ENST00000490788 C19orf57Q0VDD7 668 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 ADGRE1Q14246 886 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 SETDB1Q15047 1291 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 DUOXA2Q1HG44 320 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 KIAA0319Q5VV43 1072 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 PEAR1Q5VY43 1037 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-208ENST00000490788 USPL1Q5W0Q7 1092 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 SHISA2Q6UWI4 295 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 TXNRD3Q86VQ6 643 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 HHIPQ96QV1 700 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 BHLHE41Q9C0J9 482 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-208ENST00000490788 GZF1Q9H116 711 aaPredicted RBP3.84□□□□□ -1.79
HMGB1-208ENST00000490788 ZFYVE1Q9HBF4 777 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 OSGEPQ9NPF4 335 aa3.84□□□□□ -1.79
HMGB1-208ENST00000490788 A0A096LPE4 126 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 A0A1W2PPZ6 126 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 NFKBIEO00221 500 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 DLL1O00548 723 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 HYAL3O43820 417 aaPredicted RBP3.83□□□□□ -1.8
HMGB1-208ENST00000490788 SELPP16109 830 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 HNRNPUQ00839 825 aaKnown RBP eCLIP3.83□□□□□ -1.8
HMGB1-208ENST00000490788 CCDC27Q2M243 656 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 ALG1LQ6GMV1 187 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 DTHD1Q6ZMT9 781 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 ACAD11Q709F0 780 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 CCNJLQ8IV13 435 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 BCL11AQ9H165 835 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 AKTIPQ9H8T0 292 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 SOX13Q9UN79 622 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 CECR2Q9BXF3 1484 aa3.83□□□□□ -1.8
HMGB1-208ENST00000490788 METTL12A8MUP2 240 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 SART1O43290 800 aaKnown RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 GLB1P16278 677 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 IREB2P48200 963 aaKnown RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 NLRP12P59046 1061 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 GSTM4Q03013 218 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 DSC3Q14574 896 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 MBTPS1Q14703 1052 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 ENOX2Q16206 610 aaKnown RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 HP1BP3Q5SSJ5 553 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 EPS8L3Q8TE67 593 aaKnown RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 FBF1Q8TES7 1133 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 WFDC12Q8WWY7 111 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 USP26Q9BXU7 913 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 CEP41Q9BYV8 373 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 CLEC4MQ9H2X3 399 aaPredicted RBP3.82□□□□□ -1.8
HMGB1-208ENST00000490788 SPG7Q9UQ90 795 aa3.82□□□□□ -1.8
HMGB1-208ENST00000490788 TMEM238LA0A1B0GVL6 79 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 ANKRD33BA6NCL7 494 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 CYP11A1P05108 521 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 LDHBP07195 334 aaKnown RBP3.81□□□□□ -1.8
HMGB1-208ENST00000490788 XRCC5P13010 732 aaKnown RBP3.81□□□□□ -1.8
HMGB1-208ENST00000490788 GRIA4P48058 902 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 FCGRTP55899 365 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 JAG1P78504 1218 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 PPP2R3AQ06190 1150 aa3.81□□□□□ -1.8
HMGB1-208ENST00000490788 PCDH1Q08174 1060 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms