RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CACNA1SQ13698 1873 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 MYH7P12883 1935 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 C6orf229H3BNL8 230 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 FRAT2O75474 233 aaPredicted RBP26.05■■□□□ 1.76
SMC4-221ENST00000489573 WASHC4Q2M389 1173 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 MPNDQ8N594 471 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 APPBP2Q92624 585 aa26.05■■□□□ 1.76
SMC4-221ENST00000489573 SEC62Q99442 399 aaKnown RBP26.05■■□□□ 1.76
SMC4-221ENST00000489573 ADD2P35612 726 aa26.04■■□□□ 1.76
SMC4-221ENST00000489573 MAP3K12Q12852 859 aa26.04■■□□□ 1.76
SMC4-221ENST00000489573 SLFNL1Q499Z3 407 aa26.04■■□□□ 1.76
SMC4-221ENST00000489573 DPP8Q6V1X1 898 aaPredicted RBP26.04■■□□□ 1.76
SMC4-221ENST00000489573 KIF2CQ99661 725 aa26.04■■□□□ 1.76
SMC4-221ENST00000489573 DUOX1Q9NRD9 1551 aa26.04■■□□□ 1.76
SMC4-221ENST00000489573 PTH1RQ03431 593 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 UBE3CQ15386 1083 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 SLC9C2Q5TAH2 1124 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 OLFM4Q6UX06 510 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 IPO9Q96P70 1041 aaKnown RBP26.03■■□□□ 1.76
SMC4-221ENST00000489573 MAST3O60307 1309 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 SLX4Q8IY92 1834 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 PDE6AP16499 860 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 WWC3Q9ULE0 1092 aa26.03■■□□□ 1.76
SMC4-221ENST00000489573 HSPA4P34932 840 aa26.02■■□□□ 1.76
SMC4-221ENST00000489573 CCDC129Q6ZRS4 1044 aa26.02■■□□□ 1.76
SMC4-221ENST00000489573 TDRD7Q8NHU6 1098 aaKnown RBP26.02■■□□□ 1.76
SMC4-221ENST00000489573 OSBP2Q969R2 916 aa26.02■■□□□ 1.76
SMC4-221ENST00000489573 MYH13Q9UKX3 1938 aa26.02■■□□□ 1.76
SMC4-221ENST00000489573 LRP2BPQ9P2M1 347 aa26.01■■□□□ 1.75
SMC4-221ENST00000489573 M0R2C6 588 aa26■■□□□ 1.75
SMC4-221ENST00000489573 DPEP1P16444 411 aa26■■□□□ 1.75
SMC4-221ENST00000489573 ANAPC15P60006 121 aa26■■□□□ 1.75
SMC4-221ENST00000489573 MAP4K1Q92918 833 aa26■■□□□ 1.75
SMC4-221ENST00000489573 MYO5AQ9Y4I1 1855 aaKnown RBP26■■□□□ 1.75
SMC4-221ENST00000489573 ZNF532Q9HCE3 1301 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 CHAF1AQ13111 956 aaPredicted RBP25.99■■□□□ 1.75
SMC4-221ENST00000489573 CC2D2BQ6DHV5 1058 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 C7orf43Q8WVR3 580 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 SGIP1Q9BQI5 828 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 CD209Q9NNX6 404 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 ABCF2Q9UG63 623 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 TCRBV5S4A2TA0A5A2 114 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 TGFB2P61812 414 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 MAGEB6Q8N7X4 407 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 TTLL6Q8N841 843 aa25.99■■□□□ 1.75
SMC4-221ENST00000489573 RBM8AQ9Y5S9 174 aaKnown RBP25.99■■□□□ 1.75
SMC4-221ENST00000489573 A0A0G2JLW4 131 aa25.98■■□□□ 1.75
SMC4-221ENST00000489573 IL1R1P14778 569 aa25.98■■□□□ 1.75
SMC4-221ENST00000489573 EYA3Q99504 573 aa25.98■■□□□ 1.75
SMC4-221ENST00000489573 PUS7LQ9H0K6 701 aaKnown RBP25.98■■□□□ 1.75
SMC4-221ENST00000489573 PALD1Q9ULE6 856 aa25.98■■□□□ 1.75
SMC4-221ENST00000489573 KCNA3P22001 575 aa25.97■■□□□ 1.75
SMC4-221ENST00000489573 RABEP1Q15276 862 aa25.97■■□□□ 1.75
SMC4-221ENST00000489573 IL17RAQ96F46 866 aa25.97■■□□□ 1.75
SMC4-221ENST00000489573 RAI14Q9P0K7 980 aa25.97■■□□□ 1.75
SMC4-221ENST00000489573 ZNF219Q9P2Y4 722 aaPredicted RBP25.97■■□□□ 1.75
SMC4-221ENST00000489573 KIAA1551Q9HCM1 1747 aa25.96■■□□□ 1.75
SMC4-221ENST00000489573 WDR66Q8TBY9 1149 aa25.96■■□□□ 1.75
SMC4-221ENST00000489573 ZC3H12CQ9C0D7 883 aaKnown RBP25.96■■□□□ 1.75
SMC4-221ENST00000489573 SALL1Q9NSC2 1324 aa25.96■■□□□ 1.75
SMC4-221ENST00000489573 ZGPATQ8N5A5 531 aaKnown RBP25.95■■□□□ 1.75
SMC4-221ENST00000489573 DSCC1Q9BVC3 393 aa25.95■■□□□ 1.75
SMC4-221ENST00000489573 COA1Q9GZY4 146 aa25.95■■□□□ 1.75
SMC4-221ENST00000489573 RIMBP2O15034 1052 aa25.95■■□□□ 1.74
SMC4-221ENST00000489573 NECTIN1Q15223 517 aa25.95■■□□□ 1.74
SMC4-221ENST00000489573 ERICH6Q7L0X2 663 aa25.95■■□□□ 1.74
SMC4-221ENST00000489573 RTFDC1Q9BY42 306 aaPredicted RBP25.95■■□□□ 1.74
SMC4-221ENST00000489573 U3KPZ7 1027 aaPredicted RBP25.95■■□□□ 1.74
SMC4-221ENST00000489573 SNED1Q8TER0 1413 aa25.94■■□□□ 1.74
SMC4-221ENST00000489573 GPAA1O43292 621 aa25.94■■□□□ 1.74
SMC4-221ENST00000489573 PTGER2P43116 358 aa25.94■■□□□ 1.74
SMC4-221ENST00000489573 BECN1Q14457 450 aa25.94■■□□□ 1.74
SMC4-221ENST00000489573 GRIPAP1Q4V328 841 aa25.94■■□□□ 1.74
SMC4-221ENST00000489573 IGSF3O75054 1194 aa25.93■■□□□ 1.74
SMC4-221ENST00000489573 SPTY2D1Q68D10 685 aaPredicted RBP25.93■■□□□ 1.74
SMC4-221ENST00000489573 KCNB2Q92953 911 aa25.93■■□□□ 1.74
SMC4-221ENST00000489573 JAG2Q9Y219 1238 aa25.93■■□□□ 1.74
SMC4-221ENST00000489573 SNX14Q9Y5W7 946 aa25.93■■□□□ 1.74
SMC4-221ENST00000489573 MAST2Q6P0Q8 1798 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 C21orf2O43822 256 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 HSPD1P10809 573 aaKnown RBP25.92■■□□□ 1.74
SMC4-221ENST00000489573 VPS53Q5VIR6 699 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 RNF20Q5VTR2 975 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 CREB3L3Q68CJ9 461 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 CD2APQ9Y5K6 639 aa25.92■■□□□ 1.74
SMC4-221ENST00000489573 CYP7A1P22680 504 aa25.91■■□□□ 1.74
SMC4-221ENST00000489573 CCDC93Q567U6 631 aa25.91■■□□□ 1.74
SMC4-221ENST00000489573 TMED8Q6PL24 325 aaPredicted RBP25.91■■□□□ 1.74
SMC4-221ENST00000489573 SUPT20HQ8NEM7 779 aa25.91■■□□□ 1.74
SMC4-221ENST00000489573 AIDAQ96BJ3 306 aa25.91■■□□□ 1.74
SMC4-221ENST00000489573 PIM2Q9P1W9 311 aa25.91■■□□□ 1.74
SMC4-221ENST00000489573 SLC27A2O14975 620 aa25.9■■□□□ 1.74
SMC4-221ENST00000489573 NAA16Q6N069 864 aaPredicted RBP25.9■■□□□ 1.74
SMC4-221ENST00000489573 RASEFQ8IZ41 740 aa25.9■■□□□ 1.74
SMC4-221ENST00000489573 ZKSCAN1P17029 563 aaPredicted RBP25.9■■□□□ 1.74
SMC4-221ENST00000489573 PRDX5P30044 214 aa25.9■■□□□ 1.74
SMC4-221ENST00000489573 SNX21Q969T3 373 aa25.9■■□□□ 1.74
SMC4-221ENST00000489573 NSUN4Q96CB9 384 aaKnown RBP25.9■■□□□ 1.74
SMC4-221ENST00000489573 PPP1R1BQ9UD71 204 aaPredicted RBP25.9■■□□□ 1.74
SMC4-221ENST00000489573 MBD4O95243 580 aa25.89■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms