RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CTAGE6Q86UF2 777 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CTAGE4Q8IX94 777 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 DESI2Q9BSY9 194 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CXorf56Q9H5V9 222 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CEP83Q9Y592 693 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 A2ML1A8K2U0 1454 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 UBR1Q8IWV7 1749 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 PPFIA4O75335 1185 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 ATP1A3P13637 1013 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 BRD2P25440 801 aaKnown RBP7.16□□□□□ -1.26
VPS13D-209ENST00000487188 TOB2Q14106 344 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-209ENST00000487188 TAF7Q15545 349 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-209ENST00000487188 FOXR1Q6PIV2 292 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 SRGAP1Q7Z6B7 1085 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 PPFIBP1Q86W92 1011 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 KCNG4Q8TDN1 519 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 MAP4K1Q92918 833 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 WDR24Q96S15 920 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 HOOK1Q9UJC3 728 aaKnown RBP7.16□□□□□ -1.26
VPS13D-209ENST00000487188 KIF20BQ96Q89 1820 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 ATP7BP35670 1465 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 CPLX1O14810 134 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 POLR3DP05423 398 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-209ENST00000487188 NDUFA8P51970 172 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 MTX1Q13505 466 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 MAP9Q49MG5 647 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 SIRT1Q96EB6 747 aa7.16□□□□□ -1.26
VPS13D-209ENST00000487188 PPLO60437 1756 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 CD163L1Q9NR16 1453 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 ARHGEF10O15013 1369 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 A0A0D9SFI3 127 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 AMPHP49418 695 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 TEFQ10587 303 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 WWC2Q6AWC2 1192 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 GBP6Q6ZN66 633 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 ABCB6Q9NP58 842 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 PCDHA7Q9UN72 937 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 PA2G4Q9UQ80 394 aaKnown RBP7.15□□□□□ -1.26
VPS13D-209ENST00000487188 CCDC9Q9Y3X0 531 aaKnown RBP7.15□□□□□ -1.26
VPS13D-209ENST00000487188 MAP2P11137 1827 aaKnown RBP7.15□□□□□ -1.26
VPS13D-209ENST00000487188 VWA3AA6NCI4 1184 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 SPTLC2O15270 562 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 IBSPP21815 317 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-209ENST00000487188 MAP3K9P80192 1104 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 ZNF569Q5MCW4 686 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 TRIM65Q6PJ69 517 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 ATG3Q9NT62 314 aa7.15□□□□□ -1.26
VPS13D-209ENST00000487188 U3KPZ7 1027 aaPredicted RBP7.15□□□□□ -1.26
VPS13D-209ENST00000487188 EDC4Q6P2E9 1401 aaKnown RBP7.15□□□□□ -1.27
VPS13D-209ENST00000487188 CTAGE9A4FU28 777 aa7.15□□□□□ -1.27
VPS13D-209ENST00000487188 CHRM1P11229 460 aaPredicted RBP7.15□□□□□ -1.27
VPS13D-209ENST00000487188 CALRP27797 417 aaKnown RBP7.15□□□□□ -1.27
VPS13D-209ENST00000487188 IDI1Q13907 227 aa7.15□□□□□ -1.27
VPS13D-209ENST00000487188 C8orf76Q96K31 380 aa7.15□□□□□ -1.27
VPS13D-209ENST00000487188 RUFY1Q96T51 708 aa7.15□□□□□ -1.27
VPS13D-209ENST00000487188 MED4Q9NPJ6 270 aa7.15□□□□□ -1.27
VPS13D-209ENST00000487188 N4BP1O75113 896 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 ZNF202O95125 648 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 INPP5BP32019 993 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 SYKP43405 635 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CASP8Q14790 479 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 MTHFSDQ2M296 383 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 ADALQ6DHV7 355 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC70Q6NSX1 233 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 JMYQ8N9B5 988 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CCDC148Q8NFR7 591 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CTCFLQ8NI51 663 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CAGE1Q8TC20 777 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CPLX3Q8WVH0 158 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 LLPHQ9BRT6 129 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 RNF40O75150 1001 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 NBPF7P0C2Y1 421 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 ADKP55263 362 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 TUBB4BP68371 445 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 HSP90AB2PQ58FF8 381 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 VSTM4Q8IW00 320 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 BPIFA3Q9BQP9 254 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 UBXN6Q9BZV1 441 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 RABEP2Q9H5N1 569 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 PHAXQ9H814 394 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 PIK3C2BO00750 1634 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 LTBP4Q8N2S1 1624 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 DLG5Q8TDM6 1919 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 PATL2C9JE40 543 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 IKBKBO14920 756 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CCT5P48643 541 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 SCRN1Q12765 414 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 POLA2Q14181 598 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 FBXO31Q5XUX0 539 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 RSRC2Q7L4I2 434 aaKnown RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 POTEDQ86YR6 584 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 FMR1NBQ8N0W7 255 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CENPHQ9H3R5 247 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 CDC23Q9UJX2 597 aa7.14□□□□□ -1.27
VPS13D-209ENST00000487188 TMEM232C9JQI7 657 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 TUBBP07437 444 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 MCM3P25205 808 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 LRRC31Q6UY01 552 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 FAM76AQ8TAV0 307 aa7.13□□□□□ -1.27
VPS13D-209ENST00000487188 NUDT16Q96DE0 195 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms