RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 ZBED3Q96IU2 234 aaPredicted RBP23.05■■□□□ 1.28
PRPF40A-209ENST00000486100 IPO8O15397 1037 aaKnown RBP23.04■■□□□ 1.28
PRPF40A-209ENST00000486100 AOC2O75106 756 aa23.04■■□□□ 1.28
PRPF40A-209ENST00000486100 INTS3Q68E01 1043 aaKnown RBP23.04■■□□□ 1.28
PRPF40A-209ENST00000486100 VGLL2Q8N8G2 317 aa23.04■■□□□ 1.28
PRPF40A-209ENST00000486100 FAM205AQ6ZU69 1335 aa23.04■■□□□ 1.28
PRPF40A-209ENST00000486100 EYA2O00167 538 aa23.03■■□□□ 1.28
PRPF40A-209ENST00000486100 PTPN12Q05209 780 aaKnown RBP23.03■■□□□ 1.28
PRPF40A-209ENST00000486100 FBXO33Q7Z6M2 555 aa23.03■■□□□ 1.28
PRPF40A-209ENST00000486100 SCAF8Q9UPN6 1271 aaKnown RBP23.03■■□□□ 1.28
PRPF40A-209ENST00000486100 JAG2Q9Y219 1238 aa23.03■■□□□ 1.28
PRPF40A-209ENST00000486100 BCAR3O75815 825 aa23.02■■□□□ 1.28
PRPF40A-209ENST00000486100 DLGAP5Q15398 846 aa23.02■■□□□ 1.28
PRPF40A-209ENST00000486100 RGMBQ6NW40 437 aa23.02■■□□□ 1.28
PRPF40A-209ENST00000486100 MTMR14Q8NCE2 650 aa23.02■■□□□ 1.28
PRPF40A-209ENST00000486100 F8W031 263 aaPredicted RBP23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 CAVIN4Q5BKX8 364 aa23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 VPS37DQ86XT2 251 aa23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 BEGAINQ9BUH8 593 aa23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 PRDM10Q9NQV6 1147 aa23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 LRRFIP2Q9Y608 721 aaKnown RBP23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 POLR2AP24928 1970 aaKnown RBP23.01■■□□□ 1.27
PRPF40A-209ENST00000486100 FKBP1BP68106 108 aa23■■□□□ 1.27
PRPF40A-209ENST00000486100 NOGQ13253 232 aa23■■□□□ 1.27
PRPF40A-209ENST00000486100 CCDC102AQ96A19 550 aa23■■□□□ 1.27
PRPF40A-209ENST00000486100 MEIS3Q99687 375 aa23■■□□□ 1.27
PRPF40A-209ENST00000486100 FBXO3Q9UK99 471 aa23■■□□□ 1.27
PRPF40A-209ENST00000486100 ZNF646O15015 1829 aaPredicted RBP23■■□□□ 1.27
PRPF40A-209ENST00000486100 A0A1B0GUL6 1792 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 GNAI3P08754 354 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 TRIM27P14373 513 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 FGFR2P21802 821 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 PUM3Q15397 648 aaKnown RBP22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 MFSD14BQ5SR56 506 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 PRAMEF18Q5VWM3 479 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 ATF7IPQ6VMQ6 1270 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 ATG9AQ7Z3C6 839 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 APOBEC3FQ8IUX4 373 aaKnown RBP22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 TNS4Q8IZW8 715 aa22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 FRAT1Q92837 279 aaPredicted RBP22.99■■□□□ 1.27
PRPF40A-209ENST00000486100 IFIT1P09914 478 aaKnown RBP22.98■■□□□ 1.27
PRPF40A-209ENST00000486100 ZNF157P51786 506 aaPredicted RBP22.98■■□□□ 1.27
PRPF40A-209ENST00000486100 LBX1P52954 281 aa22.98■■□□□ 1.27
PRPF40A-209ENST00000486100 CFAP100Q494V2 611 aa22.98■■□□□ 1.27
PRPF40A-209ENST00000486100 FAM155AB1AL88 458 aaPredicted RBP22.97■■□□□ 1.27
PRPF40A-209ENST00000486100 CIAO1O76071 339 aa22.97■■□□□ 1.27
PRPF40A-209ENST00000486100 HSPA8P11142 646 aaKnown RBP22.97■■□□□ 1.27
PRPF40A-209ENST00000486100 BCAMP50895 628 aa22.97■■□□□ 1.27
PRPF40A-209ENST00000486100 SPDYE2BA6NHP3 402 aa22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 FRAT2O75474 233 aaPredicted RBP22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 SPDYE6P0CI01 402 aa22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 LPIN2Q92539 896 aa22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 PRMT6Q96LA8 375 aaPredicted RBP22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 ZIC5Q96T25 663 aa22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 IQSEC3Q9UPP2 1182 aaPredicted RBP22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 PCDHAC2Q9Y5I4 1007 aa22.96■■□□□ 1.27
PRPF40A-209ENST00000486100 MYO1BO43795 1136 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 NF2P35240 595 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 RBM5P52756 815 aaKnown RBP eCLIP22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 THSD7BQ9C0I4 1608 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 SIL1Q9H173 461 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 CEP126Q9P2H0 1117 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 TTF2Q9UNY4 1162 aaKnown RBP22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 TNNQ9UQP3 1299 aa22.95■■□□□ 1.26
PRPF40A-209ENST00000486100 SLC5A1P13866 664 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 CHAF1AQ13111 956 aaPredicted RBP22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 ZKSCAN2Q63HK3 967 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 TBC1D22AQ8WUA7 517 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 CLUAP1Q96AJ1 413 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 DEFB129Q9H1M3 183 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 COPRSQ9NQ92 184 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 SERPINA10Q9UK55 444 aa22.94■■□□□ 1.26
PRPF40A-209ENST00000486100 ZBED9Q6R2W3 1325 aa22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 CA12O43570 354 aa22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 SLC10A3P09131 477 aa22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 IL15P40933 162 aaPredicted RBP22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 MOB2Q70IA6 237 aa22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 PA2G4Q9UQ80 394 aaKnown RBP22.93■■□□□ 1.26
PRPF40A-209ENST00000486100 UBE2Q2LH0YL09 131 aa22.92■■□□□ 1.26
PRPF40A-209ENST00000486100 KIF23Q02241 960 aaPredicted RBP22.92■■□□□ 1.26
PRPF40A-209ENST00000486100 CLRN2A0PK11 232 aa22.91■■□□□ 1.26
PRPF40A-209ENST00000486100 MTX1Q13505 466 aa22.91■■□□□ 1.26
PRPF40A-209ENST00000486100 TTLL12Q14166 644 aaPredicted RBP22.91■■□□□ 1.26
PRPF40A-209ENST00000486100 PPP2R3BQ9Y5P8 575 aa22.91■■□□□ 1.26
PRPF40A-209ENST00000486100 SRGAP3O43295 1099 aa22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 GNAI2P04899 355 aa22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 HDLBPQ00341 1268 aaKnown RBP22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 GRIK5Q16478 980 aa22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 ATP2B3Q16720 1220 aa22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 VEZTQ9HBM0 779 aa22.9■■□□□ 1.26
PRPF40A-209ENST00000486100 AOX1Q06278 1338 aa22.89■■□□□ 1.26
PRPF40A-209ENST00000486100 CRKP46108 304 aa22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 ARMC9Q7Z3E5 817 aa22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 RASAL3Q86YV0 1011 aa22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 DZIP1LQ8IYY4 767 aaKnown RBP22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 TMEM57Q8N5G2 664 aa22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 MRIQ9BWK5 157 aa22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 COL1A1P02452 1464 aaPredicted RBP22.89■■□□□ 1.25
PRPF40A-209ENST00000486100 ZNF70Q9UC06 446 aaPredicted RBP22.88■■□□□ 1.25
PRPF40A-209ENST00000486100 TSKSQ9UJT2 592 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms