RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 EN2P19622 333 aaPredicted RBP22.02■■□□□ 1.12
VIM-204ENST00000478746 DDX10Q13206 875 aaKnown RBP22.02■■□□□ 1.12
VIM-204ENST00000478746 CRHR2Q13324 411 aa22.02■■□□□ 1.12
VIM-204ENST00000478746 STK31Q9BXU1 1019 aa22.02■■□□□ 1.12
VIM-204ENST00000478746 CENPFP49454 3210 aa22.02■■□□□ 1.12
VIM-204ENST00000478746 CLRN2A0PK11 232 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 IREB2P48200 963 aaKnown RBP22.01■■□□□ 1.11
VIM-204ENST00000478746 SP3Q02447 781 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 CHRNDQ07001 517 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 CERS5Q8N5B7 392 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 ARMC5Q96C12 935 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 PLA2G12BQ9BX93 195 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 PCDHAC2Q9Y5I4 1007 aa22.01■■□□□ 1.11
VIM-204ENST00000478746 F8W031 263 aaPredicted RBP22■■□□□ 1.11
VIM-204ENST00000478746 USP2O75604 605 aaPredicted RBP22■■□□□ 1.11
VIM-204ENST00000478746 CFAP100Q494V2 611 aa22■■□□□ 1.11
VIM-204ENST00000478746 NBPF12Q5TAG4 269 aaPredicted RBP22■■□□□ 1.11
VIM-204ENST00000478746 PRMT6Q96LA8 375 aaPredicted RBP22■■□□□ 1.11
VIM-204ENST00000478746 VEZTQ9HBM0 779 aa22■■□□□ 1.11
VIM-204ENST00000478746 CSF1RP07333 972 aa21.99■■□□□ 1.11
VIM-204ENST00000478746 GJA5P36382 358 aa21.99■■□□□ 1.11
VIM-204ENST00000478746 ANKRD13AQ8IZ07 590 aa21.99■■□□□ 1.11
VIM-204ENST00000478746 TMEM106CQ9BVX2 250 aa21.99■■□□□ 1.11
VIM-204ENST00000478746 SSC5DA1L4H1 1573 aa21.99■■□□□ 1.11
VIM-204ENST00000478746 SPDYE2BA6NHP3 402 aa21.98■■□□□ 1.11
VIM-204ENST00000478746 SNAP23O00161 211 aa21.98■■□□□ 1.11
VIM-204ENST00000478746 SPDYE6P0CI01 402 aa21.98■■□□□ 1.11
VIM-204ENST00000478746 GCKRQ14397 625 aa21.98■■□□□ 1.11
VIM-204ENST00000478746 PTPN18Q99952 460 aa21.98■■□□□ 1.11
VIM-204ENST00000478746 TESPA1A2RU30 521 aaPredicted RBP21.97■■□□□ 1.11
VIM-204ENST00000478746 TAF5LO75529 589 aa21.97■■□□□ 1.11
VIM-204ENST00000478746 RBM5P52756 815 aaKnown RBP eCLIP21.97■■□□□ 1.11
VIM-204ENST00000478746 C15orf52Q6ZUT6 534 aaKnown RBP21.97■■□□□ 1.11
VIM-204ENST00000478746 G2E3Q7L622 706 aa21.97■■□□□ 1.11
VIM-204ENST00000478746 HELBQ8NG08 1087 aaPredicted RBP21.97■■□□□ 1.11
VIM-204ENST00000478746 ANKRD18BA2A2Z9 1011 aa21.96■■□□□ 1.11
VIM-204ENST00000478746 SLC4A2P04920 1241 aa21.96■■□□□ 1.11
VIM-204ENST00000478746 IL1R1P14778 569 aa21.96■■□□□ 1.11
VIM-204ENST00000478746 FKBP1AP62942 108 aaKnown RBP21.96■■□□□ 1.11
VIM-204ENST00000478746 RASA3Q14644 834 aa21.96■■□□□ 1.11
VIM-204ENST00000478746 ARHGEF6Q15052 776 aa21.96■■□□□ 1.11
VIM-204ENST00000478746 RBBP6Q7Z6E9 1792 aaKnown RBP21.95■■□□□ 1.1
VIM-204ENST00000478746 FXR1P51114 621 aaKnown RBP eCLIP21.95■■□□□ 1.1
VIM-204ENST00000478746 CASP7P55210 303 aa21.95■■□□□ 1.1
VIM-204ENST00000478746 ZNF804AQ7Z570 1209 aa21.95■■□□□ 1.1
VIM-204ENST00000478746 NBPF11Q86T75 865 aa21.95■■□□□ 1.1
VIM-204ENST00000478746 MYH16Q9H6N6 1097 aa21.95■■□□□ 1.1
VIM-204ENST00000478746 IRS2Q9Y4H2 1338 aa21.95■■□□□ 1.1
VIM-204ENST00000478746 LAMB1P07942 1786 aa21.94■■□□□ 1.1
VIM-204ENST00000478746 ECM29Q5VYK3 1845 aa21.94■■□□□ 1.1
VIM-204ENST00000478746 CAP1Q01518 475 aa21.94■■□□□ 1.1
VIM-204ENST00000478746 OPTNQ96CV9 577 aa21.94■■□□□ 1.1
VIM-204ENST00000478746 ELP3Q9H9T3 547 aa21.94■■□□□ 1.1
VIM-204ENST00000478746 AOX1Q06278 1338 aa21.93■■□□□ 1.1
VIM-204ENST00000478746 TSR2Q969E8 191 aaKnown RBP21.93■■□□□ 1.1
VIM-204ENST00000478746 ZNF333Q96JL9 665 aa21.93■■□□□ 1.1
VIM-204ENST00000478746 JAG2Q9Y219 1238 aa21.93■■□□□ 1.1
VIM-204ENST00000478746 IFIT5Q13325 482 aaKnown RBP21.92■■□□□ 1.1
VIM-204ENST00000478746 SLC9C1Q4G0N8 1177 aa21.92■■□□□ 1.1
VIM-204ENST00000478746 MS4A4AQ96JQ5 239 aa21.92■■□□□ 1.1
VIM-204ENST00000478746 ZFYVE28Q9HCC9 887 aa21.92■■□□□ 1.1
VIM-204ENST00000478746 TNFAIP1Q13829 316 aa21.91■■□□□ 1.1
VIM-204ENST00000478746 SLC4A8Q2Y0W8 1093 aa21.91■■□□□ 1.1
VIM-204ENST00000478746 TWISTNBQ3B726 338 aaPredicted RBP21.91■■□□□ 1.1
VIM-204ENST00000478746 LINS1Q8NG48 757 aa21.91■■□□□ 1.1
VIM-204ENST00000478746 COLQQ9Y215 455 aaPredicted RBP21.91■■□□□ 1.1
VIM-204ENST00000478746 BRCA2P51587 3418 aa21.9■■□□□ 1.1
VIM-204ENST00000478746 TAF1CQ15572 869 aaPredicted RBP21.9■■□□□ 1.1
VIM-204ENST00000478746 DNAAF4Q8WXU2 420 aa21.9■■□□□ 1.1
VIM-204ENST00000478746 ZNF70Q9UC06 446 aaPredicted RBP21.9■■□□□ 1.1
VIM-204ENST00000478746 CHMP3Q9Y3E7 222 aa21.9■■□□□ 1.1
VIM-204ENST00000478746 PTCH2Q9Y6C5 1203 aa21.9■■□□□ 1.1
VIM-204ENST00000478746 PLIN1O60240 522 aa21.89■■□□□ 1.09
VIM-204ENST00000478746 GTF2A2P52657 109 aa21.89■■□□□ 1.09
VIM-204ENST00000478746 FLIIQ13045 1269 aa21.89■■□□□ 1.09
VIM-204ENST00000478746 FKBP5Q13451 457 aaPredicted RBP21.89■■□□□ 1.09
VIM-204ENST00000478746 BRI3BPQ8WY22 251 aa21.89■■□□□ 1.09
VIM-204ENST00000478746 CCL15-CCL14A0A0B4J2E2 113 aa21.88■■□□□ 1.09
VIM-204ENST00000478746 MAP3K9P80192 1104 aa21.88■■□□□ 1.09
VIM-204ENST00000478746 CCL15Q16663 113 aa21.88■■□□□ 1.09
VIM-204ENST00000478746 SPDYE2Q495Y8 402 aa21.88■■□□□ 1.09
VIM-204ENST00000478746 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.88■■□□□ 1.09
VIM-204ENST00000478746 CNKSR2Q8WXI2 1034 aa21.88■■□□□ 1.09
VIM-204ENST00000478746 TDRD3Q9H7E2 651 aaKnown RBP21.88■■□□□ 1.09
VIM-204ENST00000478746 FOXO4P98177 505 aa21.87■■□□□ 1.09
VIM-204ENST00000478746 PRKRIP1Q9H875 184 aaPredicted RBP21.87■■□□□ 1.09
VIM-204ENST00000478746 SERPINA10Q9UK55 444 aa21.87■■□□□ 1.09
VIM-204ENST00000478746 TTF2Q9UNY4 1162 aaKnown RBP21.87■■□□□ 1.09
VIM-204ENST00000478746 FAM205AQ6ZU69 1335 aa21.86■■□□□ 1.09
VIM-204ENST00000478746 WDHD1O75717 1129 aaPredicted RBP21.86■■□□□ 1.09
VIM-204ENST00000478746 MYCP01106 439 aaPredicted RBP21.86■■□□□ 1.09
VIM-204ENST00000478746 LDHAL6AQ6ZMR3 332 aa21.86■■□□□ 1.09
VIM-204ENST00000478746 TEPSINQ96N21 525 aa21.86■■□□□ 1.09
VIM-204ENST00000478746 CSADQ9Y600 493 aa21.86■■□□□ 1.09
VIM-204ENST00000478746 TCP10L2B9ZVM9 353 aa21.85■■□□□ 1.09
VIM-204ENST00000478746 VGLL4Q14135 290 aa21.85■■□□□ 1.09
VIM-204ENST00000478746 TAF7LQ5H9L4 462 aa21.85■■□□□ 1.09
VIM-204ENST00000478746 MFSD14BQ5SR56 506 aa21.85■■□□□ 1.09
VIM-204ENST00000478746 DZIP1LQ8IYY4 767 aaKnown RBP21.85■■□□□ 1.09
VIM-204ENST00000478746 FAM43AQ8N2R8 423 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms