RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 ZNF408Q9H9D4 720 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 GGA3Q9NZ52 723 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 MKRN1Q9UHC7 482 aaKnown RBP12.99□□□□□ -0.33
MCF2L-216ENST00000439475 AKAP2Q9Y2D5 859 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 POLR2AP24928 1970 aaKnown RBP12.99□□□□□ -0.33
MCF2L-216ENST00000439475 A0A1B0GUL6 1792 aa12.99□□□□□ -0.33
MCF2L-216ENST00000439475 TRPM7Q96QT4 1865 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 PITPNM2Q9BZ72 1349 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 MYO1BO43795 1136 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 EGFRP00533 1210 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 FGFR2P21802 821 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 ECE1P42892 770 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 DLGAP5Q15398 846 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 ATP2B3Q16720 1220 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 ANGEL2Q5VTE6 544 aaKnown RBP12.98□□□□□ -0.33
MCF2L-216ENST00000439475 ATG9AQ7Z3C6 839 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 JMYQ8N9B5 988 aa12.98□□□□□ -0.33
MCF2L-216ENST00000439475 GNL3LQ9NVN8 582 aaKnown RBP12.98□□□□□ -0.33
MCF2L-216ENST00000439475 PA2G4Q9UQ80 394 aaKnown RBP12.98□□□□□ -0.33
MCF2L-216ENST00000439475 F8W031 263 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-216ENST00000439475 WNT10BO00744 389 aa12.97□□□□□ -0.33
MCF2L-216ENST00000439475 ZBTB7BO15156 539 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-216ENST00000439475 RBM5P52756 815 aaKnown RBP eCLIP12.97□□□□□ -0.33
MCF2L-216ENST00000439475 ATP8B2P98198 1209 aa12.97□□□□□ -0.33
MCF2L-216ENST00000439475 MFSD14BQ5SR56 506 aa12.97□□□□□ -0.33
MCF2L-216ENST00000439475 CST9Q5W186 159 aa12.97□□□□□ -0.33
MCF2L-216ENST00000439475 PAXIP1Q6ZW49 1069 aaPredicted RBP12.97□□□□□ -0.33
MCF2L-216ENST00000439475 C2orf69Q8N8R5 385 aa12.97□□□□□ -0.33
MCF2L-216ENST00000439475 CNTNAP1P78357 1384 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 RASSF10A6NK89 507 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 BCAMP50895 628 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 FMR1Q06787 632 aaKnown RBP eCLIP12.96□□□□□ -0.33
MCF2L-216ENST00000439475 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.33
MCF2L-216ENST00000439475 NBPF9Q3BBW0 867 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 APOBEC3FQ8IUX4 373 aaKnown RBP12.96□□□□□ -0.33
MCF2L-216ENST00000439475 MTMR14Q8NCE2 650 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 JAG2Q9Y219 1238 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 TLL2Q9Y6L7 1015 aa12.96□□□□□ -0.33
MCF2L-216ENST00000439475 RLBP1P12271 317 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 NF2P35240 595 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 CFAP100Q494V2 611 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 CERS5Q8N5B7 392 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 WDR66Q8TBY9 1149 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 HHIPL1Q96JK4 782 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 DDX19BQ9UMR2 479 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 TTF2Q9UNY4 1162 aaKnown RBP12.95□□□□□ -0.34
MCF2L-216ENST00000439475 IQSEC3Q9UPP2 1182 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-216ENST00000439475 SUGT1Q9Y2Z0 365 aa12.95□□□□□ -0.34
MCF2L-216ENST00000439475 PNMA6EA0A0J9YXQ4 647 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 ADM5C9JUS6 153 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 SEMA3EO15041 775 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 OS9Q13438 667 aaPredicted RBP12.94□□□□□ -0.34
MCF2L-216ENST00000439475 PANK1Q8TE04 598 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 NEUROD6Q96NK8 337 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 GBA2Q9HCG7 927 aaPredicted RBP12.94□□□□□ -0.34
MCF2L-216ENST00000439475 DENND2AQ9ULE3 1009 aa12.94□□□□□ -0.34
MCF2L-216ENST00000439475 MAST3O60307 1309 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 ASTN2O75129 1339 aaPredicted RBP12.93□□□□□ -0.34
MCF2L-216ENST00000439475 WDR33Q9C0J8 1336 aaKnown RBP12.93□□□□□ -0.34
MCF2L-216ENST00000439475 SURF6O75683 361 aaKnown RBP12.93□□□□□ -0.34
MCF2L-216ENST00000439475 VEGFBP49765 207 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 TIMM10P62072 90 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 FKBP1BP68106 108 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 HDLBPQ00341 1268 aaKnown RBP12.93□□□□□ -0.34
MCF2L-216ENST00000439475 TFCP2Q12800 502 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 MVPQ14764 893 aaKnown RBP12.93□□□□□ -0.34
MCF2L-216ENST00000439475 GORABQ5T7V8 394 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 SAPCD2Q86UD0 394 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 SSH3Q8TE77 659 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 CDCA5Q96FF9 252 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 MRIQ9BWK5 157 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 SERPINA10Q9UK55 444 aa12.93□□□□□ -0.34
MCF2L-216ENST00000439475 A0A1B0GUL7 405 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 HUNKP57058 714 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 POLA2Q14181 598 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 PDE3AQ14432 1141 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 ZGPATQ8N5A5 531 aaKnown RBP12.92□□□□□ -0.34
MCF2L-216ENST00000439475 ZBED3Q96IU2 234 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-216ENST00000439475 CAPNS2Q96L46 248 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 PRMT6Q96LA8 375 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-216ENST00000439475 C1orf115Q9H7X2 142 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 COG6Q9Y2V7 657 aa12.92□□□□□ -0.34
MCF2L-216ENST00000439475 SPDYE2BA6NHP3 402 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 ZBTB22O15209 634 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 SPDYE6P0CI01 402 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 CRKP46108 304 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 TNNI2P48788 182 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 MAP2K1Q02750 393 aaPredicted RBP12.91□□□□□ -0.34
MCF2L-216ENST00000439475 GRM1Q13255 1194 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 TNFAIP1Q13829 316 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 HSP90AB4PQ58FF6 505 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 CCDC102BQ68D86 513 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 RPAP2Q8IXW5 612 aaPredicted RBP12.91□□□□□ -0.34
MCF2L-216ENST00000439475 TEKT1Q969V4 418 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 XAGE2Q96GT9 111 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 GPR108Q9NPR9 543 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 PPP2R3BQ9Y5P8 575 aa12.91□□□□□ -0.34
MCF2L-216ENST00000439475 ZNF646O15015 1829 aaPredicted RBP12.9□□□□□ -0.34
MCF2L-216ENST00000439475 HMMRO75330 724 aa12.9□□□□□ -0.34
MCF2L-216ENST00000439475 HSPA1AP0DMV8 641 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms