RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CHRNA4P43681 627 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 MAPK8P45983 427 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 ASAP3Q8TDY4 903 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 NOP53Q9NZM5 478 aaKnown RBP3.98□□□□□ -1.77
VPS13A-208ENST00000423463 IQGAP2Q13576 1575 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 UGGT2Q9NYU1 1516 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 DEAF1O75398 565 aaPredicted RBP3.98□□□□□ -1.77
VPS13A-208ENST00000423463 DMRTB1Q96MA1 342 aa3.98□□□□□ -1.77
VPS13A-208ENST00000423463 TREHO43280 583 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 CPNE3O75131 537 aaKnown RBP3.97□□□□□ -1.77
VPS13A-208ENST00000423463 ITGB2P05107 769 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 EDN3P14138 238 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 TMEM151AQ8N4L1 468 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 EPS8L3Q8TE67 593 aaKnown RBP3.97□□□□□ -1.77
VPS13A-208ENST00000423463 CITED4Q96RK1 184 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 CARD10Q9BWT7 1032 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 GOLGA3Q08378 1498 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 PNMA6FA0A0J9YX94 578 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 PATL2C9JE40 543 aaKnown RBP3.97□□□□□ -1.77
VPS13A-208ENST00000423463 LINC01387J3KSC0 135 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 PDE2AO00408 941 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-208ENST00000423463 PIK3R2O00459 728 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 PLA2G4EQ3MJ16 856 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 FMR1NBQ8N0W7 255 aaPredicted RBP3.97□□□□□ -1.77
VPS13A-208ENST00000423463 WWC3Q9ULE0 1092 aa3.97□□□□□ -1.77
VPS13A-208ENST00000423463 SPATA31C1P0DKV0 1188 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 TRIM26Q12899 539 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-208ENST00000423463 TRIM28Q13263 835 aaKnown RBP3.96□□□□□ -1.78
VPS13A-208ENST00000423463 GPAT2Q6NUI2 795 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 CCDC74AQ96AQ1 378 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 ASB16Q96NS5 453 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 DISP1Q96F81 1524 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 KIF21BO75037 1637 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 A0A1W2PP55 124 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 GRIA4P48058 902 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 DSC3Q14574 896 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 PRRT3Q5FWE3 981 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 SLC7A3Q8WY07 619 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 PMEPA1Q969W9 287 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 ALKBH8Q96BT7 664 aaKnown RBP3.96□□□□□ -1.78
VPS13A-208ENST00000423463 CSRNP1Q96S65 589 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 PPME1Q9Y570 386 aa3.96□□□□□ -1.78
VPS13A-208ENST00000423463 TTBK1Q5TCY1 1321 aaPredicted RBP3.96□□□□□ -1.78
VPS13A-208ENST00000423463 ANKRD33BA6NCL7 494 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 P4HBP07237 508 aaKnown RBP3.95□□□□□ -1.78
VPS13A-208ENST00000423463 SELPP16109 830 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 SETDB1Q15047 1291 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 HGSNATQ68CP4 663 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 CD163Q86VB7 1156 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 ZSCAN29Q8IWY8 852 aaPredicted RBP3.95□□□□□ -1.78
VPS13A-208ENST00000423463 GALNT12Q8IXK2 581 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 GALNT11Q8NCW6 608 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 TTC9Q92623 222 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 NXPE3Q969Y0 559 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 UACAQ9BZF9 1416 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 SPDYE3A6NKU9 549 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 C1QTNF9BB2RNN3 333 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 PTPRAP18433 802 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 RAC1P63000 192 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 SPRED3Q2MJR0 410 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 MUC3BQ9H195 1237 aa3.95□□□□□ -1.78
VPS13A-208ENST00000423463 ZBTB7CA1YPR0 619 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 GADD45BO75293 160 aaPredicted RBP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 ELNP15502 786 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 CDC27P30260 824 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 ILDR2Q71H61 639 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 TMEM102Q8N9M5 508 aaPredicted RBP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 EHD4Q9H223 541 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 LIN7BQ9HAP6 207 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 RNF19AQ9NV58 838 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 USP21Q9UK80 565 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 UHRF1BP1LA0JNW5 1464 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 DDX3YO15523 660 aaKnown RBP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 RANGAP1P46060 587 aaPredicted RBP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 PLCB3Q01970 1234 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 FMR1Q06787 632 aaKnown RBP eCLIP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 CCDC27Q2M243 656 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.94□□□□□ -1.78
VPS13A-208ENST00000423463 VN1R5Q7Z5H4 357 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 TCF12Q99081 682 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 KIAA0556O60303 1618 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 CTTNBP2Q8WZ74 1663 aa3.94□□□□□ -1.78
VPS13A-208ENST00000423463 NLRP12P59046 1061 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 GRM2Q14416 872 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 ENOX2Q16206 610 aaKnown RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 FOXD4L6Q3SYB3 417 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 FOXD4L3Q6VB84 417 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 DNAJC14Q6Y2X3 702 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 CCNJLQ8IV13 435 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 BSNDQ8WZ55 320 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 BHLHE41Q9C0J9 482 aaPredicted RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 ABCB6Q9NP58 842 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 KCNK4Q9NYG8 393 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 SOX13Q9UN79 622 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 FAM177BA6PVY3 158 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 H3BRJ5 948 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 FSCN2O14926 492 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 WISP1O95388 367 aa3.93□□□□□ -1.78
VPS13A-208ENST00000423463 TAGLNQ01995 201 aaKnown RBP3.93□□□□□ -1.78
VPS13A-208ENST00000423463 AGGF1Q8N302 714 aaeCLIP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms