RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SASH1O94885 1247 aa13.08□□□□□ -0.32
CUX1-204ENST00000393824 SLFNL1Q499Z3 407 aa13.08□□□□□ -0.32
CUX1-204ENST00000393824 KMT5BQ4FZB7 885 aa13.08□□□□□ -0.32
CUX1-204ENST00000393824 SLC51AQ86UW1 340 aa13.08□□□□□ -0.32
CUX1-204ENST00000393824 PUS3Q9BZE2 481 aaKnown RBP13.08□□□□□ -0.32
CUX1-204ENST00000393824 SH3TC1Q8TE82 1336 aa13.08□□□□□ -0.32
CUX1-204ENST00000393824 RAB11FIP3O75154 756 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 ADRA2BP18089 450 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 DDR1Q08345 913 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 LRMPQ12912 555 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 MSL1Q68DK7 614 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 PLA2G4DQ86XP0 818 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 TTC14Q96N46 770 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 CDHR2Q9BYE9 1310 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 CSF1RP07333 972 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 SETDB2Q96T68 719 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 MRVI1Q9Y6F6 885 aa13.07□□□□□ -0.32
CUX1-204ENST00000393824 CTSWP56202 376 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 SLC15A2Q16348 729 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 LRRC24Q50LG9 513 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 PARP10Q53GL7 1025 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 RILPL2Q969X0 211 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 PLA2G12BQ9BX93 195 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 SEC31BQ9NQW1 1179 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 LIMCH1Q9UPQ0 1083 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 CEP135Q66GS9 1140 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 KIF1BPQ96EK5 621 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 TSPYL1Q9H0U9 437 aa13.06□□□□□ -0.32
CUX1-204ENST00000393824 BAG6P46379 1132 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 ZNF75DP51815 510 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 DNM1Q05193 864 aaKnown RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 TYRO3Q06418 890 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 MAP3K11Q16584 847 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 TPD52L1Q16890 204 aaPredicted RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 NBPF5PQ86XG9 351 aaPredicted RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 DHX37Q8IY37 1157 aaKnown RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 RHPN1Q8TCX5 695 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 SMC3Q9UQE7 1217 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 RGPD3A6NKT7 1758 aaPredicted RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 RGPD4Q7Z3J3 1758 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 RAD50Q92878 1312 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 CARMIL3Q8ND23 1372 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 ITGA6P23229 1130 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 TM4SF1P30408 202 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 SF3B2Q13435 895 aaKnown RBP13.05□□□□□ -0.32
CUX1-204ENST00000393824 ATG9AQ7Z3C6 839 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 LUZP1Q86V48 1076 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 COPRSQ9NQ92 184 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 NRBP1Q9UHY1 535 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 MTMR6Q9Y217 621 aa13.05□□□□□ -0.32
CUX1-204ENST00000393824 DDX60Q8IY21 1712 aaKnown RBP13.04□□□□□ -0.32
CUX1-204ENST00000393824 PDE8AO60658 829 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 CAPN2P17655 700 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 TDRD7Q8NHU6 1098 aaKnown RBP13.04□□□□□ -0.32
CUX1-204ENST00000393824 ERO1AQ96HE7 468 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 CCDC171Q6TFL3 1326 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 COL24A1Q17RW2 1714 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 CDC25BP30305 580 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 NYAP1Q6ZVC0 841 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 CACTINQ8WUQ7 758 aaKnown RBP13.04□□□□□ -0.32
CUX1-204ENST00000393824 NUP62CLQ9H1M0 184 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 CBX8Q9HC52 389 aa13.04□□□□□ -0.32
CUX1-204ENST00000393824 TLR7Q9NYK1 1049 aaKnown RBP13.04□□□□□ -0.32
CUX1-204ENST00000393824 ZNF215Q9UL58 517 aaPredicted RBP13.04□□□□□ -0.32
CUX1-204ENST00000393824 ELP1O95163 1332 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 POLRMTO00411 1230 aaKnown RBP13.03□□□□□ -0.32
CUX1-204ENST00000393824 SGSM2O43147 1006 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 NEMFO60524 1076 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 CYP2C19P33261 490 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 AK2P54819 239 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 OS9Q13438 667 aaPredicted RBP13.03□□□□□ -0.32
CUX1-204ENST00000393824 TPRNQ4KMQ1 711 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 PRR5LQ6MZQ0 368 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 FBXO38Q6PIJ6 1188 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 RBM43Q6ZSC3 357 aaKnown RBP13.03□□□□□ -0.32
CUX1-204ENST00000393824 RUFY3Q7L099 469 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 DRC7Q8IY82 874 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 TRIM5Q9C035 493 aa13.03□□□□□ -0.32
CUX1-204ENST00000393824 TFCP2Q12800 502 aa13.02□□□□□ -0.32
CUX1-204ENST00000393824 RNF20Q5VTR2 975 aa13.02□□□□□ -0.32
CUX1-204ENST00000393824 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.32
CUX1-204ENST00000393824 EAF2Q96CJ1 260 aaPredicted RBP13.02□□□□□ -0.32
CUX1-204ENST00000393824 ZSCAN31Q96LW9 406 aaPredicted RBP13.02□□□□□ -0.32
CUX1-204ENST00000393824 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.32
CUX1-204ENST00000393824 SNX14Q9Y5W7 946 aa13.02□□□□□ -0.32
CUX1-204ENST00000393824 TAF1P21675 1872 aa13.02□□□□□ -0.32
CUX1-204ENST00000393824 WTIPA6NIX2 430 aaPredicted RBP13.02□□□□□ -0.33
CUX1-204ENST00000393824 SNAP23O00161 211 aa13.02□□□□□ -0.33
CUX1-204ENST00000393824 RGL2O15211 777 aa13.02□□□□□ -0.33
CUX1-204ENST00000393824 TNRC6CQ9HCJ0 1690 aaKnown RBP13.02□□□□□ -0.33
CUX1-204ENST00000393824 SERPINB2P05120 415 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 CCDC57Q2TAC2 916 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 ILDR2Q71H61 639 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 IL25Q9H293 177 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 SH2B1Q9NRF2 756 aaPredicted RBP13.01□□□□□ -0.33
CUX1-204ENST00000393824 KCND1Q9NSA2 647 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 RNF216Q9NWF9 866 aaPredicted RBP13.01□□□□□ -0.33
CUX1-204ENST00000393824 CAVIN2O95810 425 aa13.01□□□□□ -0.33
CUX1-204ENST00000393824 IFIT5Q13325 482 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms