RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 C1orf167Q5SNV9 1468 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 SOWAHDA6NJG2 315 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 ABL1P00519 1130 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 PDE3BQ13370 1112 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 SCARF1Q14162 830 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 ATCAYQ86WG3 371 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 DZIP3Q86Y13 1208 aaKnown RBP3.1□□□□□ -1.91
VPS54-202ENST00000354504 FAM200AQ8TCP9 573 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 DLEC1Q9Y238 1755 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 CBLBQ13191 982 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 BPHLQ86WA6 291 aaPredicted RBP3.1□□□□□ -1.91
VPS54-202ENST00000354504 PHACTR3Q96KR7 559 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 FAM161BQ96MY7 647 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 PARP3Q9Y6F1 533 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 EVC2Q86UK5 1308 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 SCN7AQ01118 1682 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 FOCADQ5VW36 1801 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 CHD4Q14839 1912 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 LCE2CQ5TA81 110 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 ZNF295-AS1Q8N0V1 137 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 ZNF358Q9NW07 568 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 SERTAD1Q9UHV2 236 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 EMILIN1Q9Y6C2 1016 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 ARHGEF10O15013 1369 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 KIF24Q5T7B8 1368 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 IBTKQ9P2D0 1353 aaPredicted RBP3.1□□□□□ -1.91
VPS54-202ENST00000354504 PXDNLA1KZ92 1463 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 H3BRB1 525 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 IGHA2P01877 340 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 TIMP2P16035 220 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 WEE1P30291 646 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 EML3Q32P44 896 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 IGSF1Q8N6C5 1336 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 ZSCAN1Q8NBB4 408 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 EXOC6Q8TAG9 804 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 HPS1Q92902 700 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 COL26A1Q96A83 441 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 TUT1Q9H6E5 874 aaKnown RBP3.09□□□□□ -1.91
VPS54-202ENST00000354504 CABP1Q9NZU7 370 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 CXXC1Q9P0U4 656 aaPredicted RBP3.09□□□□□ -1.91
VPS54-202ENST00000354504 NHSQ6T4R5 1651 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 PLEKHG2Q9H7P9 1386 aa3.09□□□□□ -1.91
VPS54-202ENST00000354504 SENP3-EIF4A1A0A087X0R7 540 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 MTHFSP49914 203 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 C8orf34Q49A92 452 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 LDLRAD1Q5T700 205 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 NPAS4Q8IUM7 802 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 MEIOBQ8N635 442 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 GTF3C2Q8WUA4 911 aaPredicted RBP3.09□□□□□ -1.92
VPS54-202ENST00000354504 QSER1Q2KHR3 1735 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 KDM6AO15550 1401 aaPredicted RBP3.09□□□□□ -1.92
VPS54-202ENST00000354504 RTL1A6NKG5 1358 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 IL16Q14005 1332 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 TTC21BQ7Z4L5 1316 aa3.09□□□□□ -1.92
VPS54-202ENST00000354504 BCAR3O75815 825 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 IGHDP01880 384 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 RARSP54136 660 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 IRX6P78412 446 aaPredicted RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 MRPL14Q6P1L8 145 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 TAS1R3Q7RTX0 852 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 NME9Q86XW9 330 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 SLC10A4Q96EP9 437 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 TAF1P21675 1872 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 DDX60LQ5H9U9 1706 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 PCNTO95613 3336 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 MEGF6O75095 1541 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 DISP2A7MBM2 1401 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 CGNL1Q0VF96 1302 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 FANCIQ9NVI1 1328 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 ATP5J2-PTCD1G3V325 749 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 RNF144AP50876 292 aaPredicted RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 PSME1Q06323 249 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 B4GALNT3Q6L9W6 998 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 IGSF5Q9NSI5 407 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 PGPEP1Q9NXJ5 209 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 UBR3Q6ZT12 1888 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 NRXN2Q9P2S2 1712 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 TMEM94Q12767 1356 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 J3QL48 77 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 PLIN1O60240 522 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 ERVK-9P63128 1117 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 LRP10Q7Z4F1 713 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 WDR63Q8IWG1 891 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 SIRT2Q8IXJ6 389 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 NUDT16Q96DE0 195 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 AGBL1Q96MI9 1066 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 HINFPQ9BQA5 517 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 TSEN34Q9BSV6 310 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 CCDC87Q9NVE4 849 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 PPP4R2Q9NY27 417 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 RBM19Q9Y4C8 960 aaKnown RBP3.08□□□□□ -1.92
VPS54-202ENST00000354504 LRRC37AA6NMS7 1700 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 SBNO1A3KN83 1393 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 TCHHQ07283 1943 aa3.08□□□□□ -1.92
VPS54-202ENST00000354504 ACEP12821 1306 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 SALL3Q9BXA9 1300 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 A6NHS1 94 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 SPATA31C2B4DYI2 1134 aa3.07□□□□□ -1.92
VPS54-202ENST00000354504 APAF1O14727 1248 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 161.9 ms