RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NDUFA8P51970 172 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 MAGEB6Q8N7X4 407 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 NCOA7Q8NI08 942 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 C19orf44Q9H6X5 657 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 SLC12A7Q9Y666 1083 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 ADAMTS13Q76LX8 1427 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 USP27XA6NNY8 438 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 SYKP43405 635 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 ZSCAN25Q6NSZ9 544 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 AOX1Q06278 1338 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 ITGA6P23229 1130 aa13.83□□□□□ -0.19
USP1-201ENST00000339950 PRIMPOLQ96LW4 560 aa13.83□□□□□ -0.19
USP1-201ENST00000339950 KCNF1Q9H3M0 494 aa13.83□□□□□ -0.19
USP1-201ENST00000339950 PLEKHG1Q9ULL1 1385 aa13.83□□□□□ -0.19
USP1-201ENST00000339950 PCDHA7Q9UN72 937 aa13.83□□□□□ -0.2
USP1-201ENST00000339950 ERBB3P21860 1342 aa13.83□□□□□ -0.2
USP1-201ENST00000339950 KARSQ15046 597 aaKnown RBP13.83□□□□□ -0.2
USP1-201ENST00000339950 DPCR1Q3MIW9 517 aa13.83□□□□□ -0.2
USP1-201ENST00000339950 PLBD2Q8NHP8 589 aa13.83□□□□□ -0.2
USP1-201ENST00000339950 UBAC1Q9BSL1 405 aa13.83□□□□□ -0.2
USP1-201ENST00000339950 ANKRD18BA2A2Z9 1011 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 STARD3NLO95772 234 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 TPM3P06753 285 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 TEX35Q5T0J7 233 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 NSUN7Q8NE18 718 aaKnown RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 TM6SF1Q9BZW5 370 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 CLTCQ00610 1675 aaKnown RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 VIRMAQ69YN4 1812 aaKnown RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 MAST3O60307 1309 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 PDIA3P30101 505 aaKnown RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 GOLPH3LQ9H4A5 285 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 ZSCAN16Q9H4T2 348 aaPredicted RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 NBPF26B4DH59 902 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 IRS4O14654 1257 aaPredicted RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 NBPF14Q5TI25 921 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 NBPF10Q6P3W6 841 aaKnown RBP13.82□□□□□ -0.2
USP1-201ENST00000339950 GRAMD1CQ8IYS0 662 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 NBPF15Q8N660 670 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 GREM2Q9H772 168 aa13.82□□□□□ -0.2
USP1-201ENST00000339950 MBD4O95243 580 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 HOXB7P09629 217 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 PIP4K2BP78356 416 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 PPARDQ03181 441 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 PNOCQ13519 176 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 XPO4Q9C0E2 1151 aaKnown RBP13.81□□□□□ -0.2
USP1-201ENST00000339950 ZBTB43O43298 467 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 UBASH3AP57075 661 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 SNW1Q13573 536 aaKnown RBP13.81□□□□□ -0.2
USP1-201ENST00000339950 ELF2Q15723 593 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 UTP14AQ9BVJ6 771 aaKnown RBP13.81□□□□□ -0.2
USP1-201ENST00000339950 LONRF3Q496Y0 759 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 KIAA1524Q8TCG1 905 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 HMGB1P09429 215 aaKnown RBP13.81□□□□□ -0.2
USP1-201ENST00000339950 ATP1A3P13637 1013 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 TRIM22Q8IYM9 498 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 KIF18AQ8NI77 898 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 HINFPQ9BQA5 517 aa13.81□□□□□ -0.2
USP1-201ENST00000339950 RIMS1Q86UR5 1692 aaKnown RBP13.8□□□□□ -0.2
USP1-201ENST00000339950 PRKAB2O43741 272 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 TOP1P11387 765 aaKnown RBP13.8□□□□□ -0.2
USP1-201ENST00000339950 PHKA1P46020 1223 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 PDIA6Q15084 440 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 HAUS7Q99871 368 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 ZNF215Q9UL58 517 aaPredicted RBP13.8□□□□□ -0.2
USP1-201ENST00000339950 AKAP2Q9Y2D5 859 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 TMEM131LA2VDJ0 1609 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 ZNF202O95125 648 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 DNA2P51530 1060 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 CCDC94Q9BW85 323 aaPredicted RBP13.8□□□□□ -0.2
USP1-201ENST00000339950 COPRSQ9NQ92 184 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 SLC4A4Q9Y6R1 1079 aa13.8□□□□□ -0.2
USP1-201ENST00000339950 CASP1P29466 404 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 FAM160A1Q05DH4 1040 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 DHX58Q96C10 678 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 BTG4Q9NY30 223 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 SSH2Q76I76 1423 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 ATP2B2Q01814 1243 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 SART3Q15020 963 aaKnown RBP13.79□□□□□ -0.2
USP1-201ENST00000339950 HLFQ16534 295 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 SDR42E1Q8WUS8 393 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 CDC42BPGQ6DT37 1551 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 ZNF532Q9HCE3 1301 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 SENP2Q9HC62 589 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 VAT1LQ9HCJ6 419 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 USP31Q70CQ4 1352 aa13.79□□□□□ -0.2
USP1-201ENST00000339950 USP32Q8NFA0 1604 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 RESTQ13127 1097 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 FAM182BQ5T319 152 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 GNG11P61952 73 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 EPC1Q9H2F5 836 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 LZTFL1Q9NQ48 299 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 SEC31BQ9NQW1 1179 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 BAZ2BQ9UIF8 2168 aaKnown RBP13.78□□□□□ -0.2
USP1-201ENST00000339950 CYP2D7A0A087X1C5 515 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 ENOX2Q16206 610 aaKnown RBP13.78□□□□□ -0.2
USP1-201ENST00000339950 UBXN4Q92575 508 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 DESI2Q9BSY9 194 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 CABP5Q9NP86 173 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 WWC3Q9ULE0 1092 aa13.78□□□□□ -0.2
USP1-201ENST00000339950 DLC1Q96QB1 1528 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms