RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 ELP1O95163 1332 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 MAP3K12Q12852 859 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 EVI5LQ96CN4 794 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 OAS2P29728 719 aaKnown RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 DUSP27Q5VZP5 1158 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 STK10O94804 968 aaKnown RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 MYO18AQ92614 2054 aaKnown RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 GIPC1O14908 333 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 PTGS1P23219 599 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 KLHDC4Q8TBB5 520 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 MPHOSPH6Q99547 160 aaKnown RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 CACYBPQ9HB71 228 aaKnown RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 NUMA1Q14980 2115 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 AKR1B15C9JRZ8 316 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 ITIH3Q06033 890 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 NUTM2AQ8IVF1 878 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 DACT3Q96B18 629 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-201ENST00000335551 FAM135AQ9P2D6 1515 aa6.93□□□□□ -1.3
CSMD1-201ENST00000335551 PLCB3Q01970 1234 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 CCDC92Q53HC0 331 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 VWA3BQ502W6 1294 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 TBC1D9Q6ZT07 1266 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 BAG1Q99933 345 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 METAP2P50579 478 aaKnown RBP eCLIP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 SYT10Q6XYQ8 523 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 CENPKQ9BS16 269 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 TLDC2A0PJX2 215 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 SDCCAG3Q96C92 435 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 MKNK2Q9HBH9 465 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 PAK2Q13177 524 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 LGSNQ5TDP6 509 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 PPP4R1Q8TF05 950 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 GDPD2Q9HCC8 539 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 CNPY2Q9Y2B0 182 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 E7EVH7 732 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 CAMSAP2Q08AD1 1489 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 MAN1A2O60476 641 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 ERCC5P28715 1186 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 IARSP41252 1262 aaKnown RBP6.92□□□□□ -1.3
CSMD1-201ENST00000335551 ELF2Q15723 593 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 LRRC9Q6ZRR7 1453 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 USP48Q86UV5 1035 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 NOX5Q96PH1 765 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 ANKRD50Q9ULJ7 1429 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 ATP2A3Q93084 1043 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 SCINQ9Y6U3 715 aa6.92□□□□□ -1.3
CSMD1-201ENST00000335551 ZNF213O14771 459 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 CYP26C1Q6V0L0 522 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 SNX21Q969T3 373 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 KLHL14Q9P2G3 628 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ASIC1P78348 528 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 BRD3Q15059 726 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 USP6NLQ92738 828 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PANK2Q9BZ23 570 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 RNF40O75150 1001 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PHEXP78562 749 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 HHATQ5VTY9 493 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 NPHP3Q7Z494 1330 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 IFIT3O14879 490 aaKnown RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 CHMP2AO43633 222 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 NBPF7P0C2Y1 421 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ESRRGP62508 458 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 CASKIN1Q8WXD9 1431 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ZKSCAN8Q15776 578 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 P3H4Q92791 437 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 WDR70Q9NW82 654 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 BAIAP2L1Q9UHR4 511 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 POLR3DP05423 398 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ANKRD20A3Q5VUR7 823 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 CCDC68Q9H2F9 335 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ATL3Q6DD88 541 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 ORC3Q9UBD5 711 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PSMD6Q15008 389 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 SPECC1L-ADORA2AF8WAN1 911 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 RANBP6O60518 1105 aaKnown RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 VPS41P49754 854 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 CCT2P78371 535 aaKnown RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PPP1R21Q6ZMI0 780 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 DNAJC25Q9H1X3 360 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PTPRCP08575 1304 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PRIM1P49642 420 aaKnown RBP6.91□□□□□ -1.3
CSMD1-201ENST00000335551 DMTNQ08495 405 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PPP2R5EQ16537 467 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 SYCE1Q8N0S2 351 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 GGNBP2Q9H3C7 697 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 EXOC6BQ9Y2D4 811 aa6.91□□□□□ -1.3
CSMD1-201ENST00000335551 PCYT1AP49585 367 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 DEUP1Q05D60 604 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 PDE4BQ07343 736 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 RAB3GAP1Q15042 981 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 EFCAB13Q8IY85 973 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 TMEM67Q5HYA8 995 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 UTP14CQ5TAP6 766 aaKnown RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 RASIP1Q5U651 963 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 CRACR2BQ8N4Y2 399 aaPredicted RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 HELBQ8NG08 1087 aaPredicted RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 TMEM110-MUSTN1A8MSY1 372 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 IGSF3O75054 1194 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms