RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PHLDB3Q6NSJ2 640 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 RBM27Q9P2N5 1060 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 LUC7L3O95232 432 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 DBN1Q16643 649 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 CDC5LQ99459 802 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 NDUFAB1O14561 156 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 TSPY3P0CV98 308 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 TSPY8P0CW00 308 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 IFIT1BQ5T764 474 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 IFT20Q8IY31 132 aa15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 CCDC124Q96CT7 223 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-201ENST00000263630 NBPF6Q5VWK0 638 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 FAM212AQ96EL1 285 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 NBPF4Q96M43 638 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 ASIC1P78348 528 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 DIXDC1Q155Q3 683 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 HSP90AA5PQ58FG0 334 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 NOLC1Q14978 699 aaKnown RBP eCLIP15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 PPP1R2P41236 205 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 FAM160A1Q05DH4 1040 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 TAF7Q15545 349 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 VSIG1Q86XK7 387 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 OGFRQ9NZT2 677 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 GOLGA8QA0A0J9YX86 632 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 GOLGA8OA6NCC3 632 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 GOLGA8NF8WBI6 632 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 LARSQ9P2J5 1176 aaKnown RBP15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 KIF11P52732 1056 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 ANO6Q4KMQ2 910 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 MICU3Q86XE3 530 aa15.61■□□□□ 0.09
CCDC88A-201ENST00000263630 RNF34Q969K3 372 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 PPME1Q9Y570 386 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 SLC12A2P55011 1212 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 LIN9Q5TKA1 542 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 DRC3Q9H069 523 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 TMOD3Q9NYL9 352 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 RFX1P22670 979 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 CALML3P27482 149 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 RBBP5Q15291 538 aaKnown RBP15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 ZNF830Q96NB3 372 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 ORC3Q9UBD5 711 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 AFMP43652 599 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 LEO1Q8WVC0 666 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 OPHN1O60890 802 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 HPDP32754 393 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 RAP1GDS1P52306 607 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 GUCA1BQ9UMX6 200 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 AMOTQ4VCS5 1084 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 ORC6Q9Y5N6 252 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 MCM7P33993 719 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 WTAPQ15007 396 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 ATAD2Q6PL18 1390 aa15.6■□□□□ 0.09
CCDC88A-201ENST00000263630 ARHGAP4P98171 946 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 HHATQ5VTY9 493 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 FAF1Q9UNN5 650 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 RILPQ96NA2 401 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 BAG1Q99933 345 aaPredicted RBP15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 TMOD4Q9NZQ9 345 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 EXOC6BQ9Y2D4 811 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 ANKRD20A3Q5VUR7 823 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 TNPO1Q92973 898 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 CHMP2AO43633 222 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 PDZD8Q8NEN9 1154 aa15.59■□□□□ 0.09
CCDC88A-201ENST00000263630 CCDC85AQ96PX6 553 aaPredicted RBP15.58■□□□□ 0.09
CCDC88A-201ENST00000263630 EPB41P11171 864 aaKnown RBP15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 CCDC122Q5T0U0 273 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 PRDM11Q9NQV5 511 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 ZSCAN23Q3MJ62 389 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 KRT5P13647 590 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 PROSER2Q86WR7 435 aaPredicted RBP15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 FAM200AQ8TCP9 573 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 NOX5Q96PH1 765 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 NEK1Q96PY6 1258 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 TRIM14Q14142 442 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 DUSP27Q5VZP5 1158 aa15.58■□□□□ 0.08
CCDC88A-201ENST00000263630 ZNF569Q5MCW4 686 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 PANK2Q9BZ23 570 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 FAM8A1Q9UBU6 413 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 SPOPO43791 374 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 HELBQ8NG08 1087 aaPredicted RBP15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 ARHGAP5Q13017 1502 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 KLHL40Q2TBA0 621 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 CDAN1Q8IWY9 1227 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 PARP2Q9UGN5 583 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 AKNAQ7Z591 1439 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 CALM1P0DP23 149 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 CALM2P0DP24 149 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 CALM3P0DP25 149 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 PFDN6O15212 129 aa15.57■□□□□ 0.08
CCDC88A-201ENST00000263630 RHOXF2BP0C7M4 288 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 RHOXF2Q9BQY4 288 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 ZKSCAN3Q9BRR0 538 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 GIMAP4Q9NUV9 329 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 MTMR3Q13615 1198 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 MRPL46Q9H2W6 279 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 STX8Q9UNK0 236 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 MX2P20592 715 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 CCDC93Q567U6 631 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 P3H4Q92791 437 aa15.56■□□□□ 0.08
CCDC88A-201ENST00000263630 LRRC43Q8N309 656 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms