RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 LGALS8O00214 317 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 FCGR3AP08637 254 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 HOXB5P09067 269 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 CEACAM8P31997 349 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-202ENST00000374876 OPRM1P35372 400 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 RBMXP38159 391 aaKnown RBP13.33□□□□□ -0.28
CCDC40-202ENST00000374876 SNTB1Q13884 538 aaKnown RBP13.33□□□□□ -0.28
CCDC40-202ENST00000374876 PAN3Q58A45 887 aaKnown RBP13.33□□□□□ -0.28
CCDC40-202ENST00000374876 SGPP2Q8IWX5 399 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 EIF4E3Q8N5X7 224 aaKnown RBP13.33□□□□□ -0.28
CCDC40-202ENST00000374876 OR10C1Q96KK4 312 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 C1orf123Q9NWV4 160 aa13.33□□□□□ -0.28
CCDC40-202ENST00000374876 H0YIZ8 118 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 RPL36A-HNRNPH2H7BZ11 118 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 MSTNO14793 375 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 CTSDP07339 412 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-202ENST00000374876 SFTPBP07988 381 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 PET100P0DJ07 73 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 STK11Q15831 433 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 PRSS54Q6PEW0 395 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 BRICD5Q6PL45 260 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-202ENST00000374876 PIK3IP1Q96FE7 263 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 COQ3Q9NZJ6 369 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 GSKIPQ9P0R6 139 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 GPR160Q9UJ42 338 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 SPTBN1Q01082 2364 aaKnown RBP13.32□□□□□ -0.28
CCDC40-202ENST00000374876 HLA-HP01893 362 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 MALLQ13021 153 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 TUSC1Q2TAM9 212 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 COLCA1Q6ZS62 124 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 DYRK2Q92630 601 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 APH1AQ96BI3 265 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 RRNAD1Q96FB5 475 aaKnown RBP13.32□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF175Q9Y473 711 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 LRRK2Q5S007 2527 aa13.32□□□□□ -0.28
CCDC40-202ENST00000374876 C5orf49A4QMS7 147 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF724A8MTY0 619 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 TPT1P13693 172 aaKnown RBP13.31□□□□□ -0.28
CCDC40-202ENST00000374876 BMP5P22003 454 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF611Q8N823 705 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 POC1AQ8NBT0 407 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 STOML3Q8TAV4 291 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 CA5BP1Q8WTZ4 195 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 PAPOLGQ9BWT3 736 aaKnown RBP13.31□□□□□ -0.28
CCDC40-202ENST00000374876 DNTTIP1Q9H147 329 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 RNF122Q9H9V4 155 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 DECR2Q9NUI1 292 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 OR5AC2Q9NZP5 309 aa13.31□□□□□ -0.28
CCDC40-202ENST00000374876 INTS1Q8N201 2190 aaKnown RBP13.31□□□□□ -0.28
CCDC40-202ENST00000374876 A1L4Q6 167 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 F8VVB4 439 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 F8VWA3 439 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 PDCD6O75340 191 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CD79AP11912 226 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 LYL1P12980 280 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 RBM11P57052 281 aaKnown RBP13.3□□□□□ -0.28
CCDC40-202ENST00000374876 S100A10P60903 97 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 RAB32Q13637 225 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 ELP2Q6IA86 826 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 DHRS11Q6UWP2 260 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 SLC25A26Q70HW3 274 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CALHM1Q8IU99 346 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 MCEMP1Q8IX19 187 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF808Q8N4W9 903 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-202ENST00000374876 TOMM40LQ969M1 308 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 TAS2R3Q9NYW6 316 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 SPEF1Q9Y4P9 236 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 DOPEY2Q9Y3R5 2298 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 FAM221AA4D161 298 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CRYM-AS1A6NIL9 109 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF728P0DKX0 622 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CCL2P13500 99 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CHRNB4P30926 498 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 RNPS1Q15287 305 aaKnown RBP13.3□□□□□ -0.28
CCDC40-202ENST00000374876 SLC22A25Q6T423 547 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 MRPL21Q7Z2W9 205 aaKnown RBP13.3□□□□□ -0.28
CCDC40-202ENST00000374876 CNEP1R1Q8N9A8 125 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 BHLHE23Q8NDY6 225 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 OR56B2PQ8NGI1 322 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF286AQ9HBT8 521 aa13.3□□□□□ -0.28
CCDC40-202ENST00000374876 BARX1Q9HBU1 254 aaPredicted RBP13.3□□□□□ -0.28
CCDC40-202ENST00000374876 NKX2-6A6NCS4 301 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 FAM90A27PA6NNH2 459 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 COX5BP10606 129 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 FOXG1P55316 489 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 NAAAQ02083 359 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 RBM39Q14498 530 aaKnown RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 ABCA11PQ4W5N1 156 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 REPIN1Q9BWE0 567 aaKnown RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 SHARPINQ9H0F6 387 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 LIME1Q9H400 295 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 ZNF442Q9H7R0 627 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 C12orf4Q9NQ89 552 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 OR7C1O76099 320 aaPredicted RBP13.29□□□□□ -0.28
CCDC40-202ENST00000374876 CLDN14O95500 239 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 IFNA21P01568 189 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 FUT3P21217 361 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 ARR3P36575 388 aa13.29□□□□□ -0.28
CCDC40-202ENST00000374876 KIR2DL2P43627 348 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms