RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IGHV3OR16-12A0A075B7B8 117 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 RPL13AP40429 203 aaKnown RBP13.7□□□□□ -0.22
PTPRF-201ENST00000359947 KCNMB1Q16558 191 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 P2RX4Q99571 388 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 SRRQ9GZT4 340 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 DCAF16Q9NXF7 216 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 RASL12Q9NYN1 266 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 MMP15P51511 669 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 PJVKQ0ZLH3 352 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 CBY3A6NI87 242 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 GATCO43716 136 aaKnown RBP13.7□□□□□ -0.22
PTPRF-201ENST00000359947 MYPOPQ86VE0 399 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-201ENST00000359947 NHLRC2Q8NBF2 726 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 MOSPD3O75425 235 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 FUCA1P04066 466 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 FABP4P15090 132 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 PIGYQ3MUY2 71 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 BAP18Q8IXM2 172 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 VSIG4Q9Y279 399 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 A0A1B0GUH1 482 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 ACSM4P0C7M7 580 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 PMCHP20382 165 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 PMELP40967 661 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 ZBTB37Q5TC79 503 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 CADM3Q8N126 398 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 C17orf47Q8NEP4 570 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 YIPF6Q96EC8 236 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 RAB5AP20339 215 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 G6PCP35575 357 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 FLYWCH2Q96CP2 140 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 C10orf90Q96M02 699 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 SF3B5Q9BWJ5 86 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 CISD1Q9NZ45 108 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 FAM24AA6NFZ4 105 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 KCNAB3O43448 404 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 SCGB1C2P0DMR2 95 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 PEBP1P30086 187 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 GNG4P50150 75 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 TIAL1Q01085 375 aaKnown RBP eCLIP13.69□□□□□ -0.223e-6■■■□□ 14.6
PTPRF-201ENST00000359947 SPICQ8N5J4 248 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 IGHV3OR16-10A0A075B7F0 116 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 NEURL1O76050 574 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 TBC1D26Q86UD7 250 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 ARRDC1Q8N5I2 433 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 TMPRSS5Q9H3S3 457 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 DTX4Q9Y2E6 619 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 CST2P09228 141 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 ACAA2P42765 397 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 HARBI1Q96MB7 349 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 PARP11Q9NR21 331 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 CTAG2O75638 210 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 SMIM4Q8WVI0 70 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 C1QBP02746 253 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 TPRX1Q8N7U7 411 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF385AQ96PM9 386 aaKnown RBP13.69□□□□□ -0.22
PTPRF-201ENST00000359947 SHANK3Q9BYB0 1731 aa13.69□□□□□ -0.22
PTPRF-201ENST00000359947 PPIAL4EA0A075B759 164 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 IGHV3-72A0A0B4J1Y9 119 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 PPIAL4DF5H284 164 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 PPIAL4FP0DN26 164 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF488Q96MN9 340 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 PPIAL4AQ9Y536 164 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 RREB1Q92766 1687 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 PAFAH1B2P68402 229 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 RNASEKQ6P5S7 137 aaKnown RBP13.68□□□□□ -0.22
PTPRF-201ENST00000359947 TMEM88Q6PEY1 159 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 OR4A4PQ8NGN8 299 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 WDR54Q9H977 334 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 LTBP4Q8N2S1 1624 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 TRDCB7Z8K6 153 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 NAT2P11245 290 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 ATP5J2P56134 94 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 LOXL3P58215 753 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 RPL31P62899 125 aaKnown RBP13.68□□□□□ -0.22
PTPRF-201ENST00000359947 COL10A1Q03692 680 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 CDC20Q12834 499 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 PPP1R1AQ13522 171 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 WDR34Q96EX3 536 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 CCL13Q99616 98 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 MGPP08493 103 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 TMEM52Q8NDY8 209 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 HMGCLL1Q8TB92 370 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 GPR137Q96N19 417 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF586Q9NXT0 402 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 MYOFQ9NZM1 2061 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 LY6EQ16553 131 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 MIDNQ504T8 468 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 ATG4DQ86TL0 474 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-201ENST00000359947 OR8I2Q8N0Y5 310 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 RNF2Q99496 336 aa13.68□□□□□ -0.22
PTPRF-201ENST00000359947 SNRPGP15A8MWD9 76 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 SLC25A45Q8N413 288 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 ORM1P02763 201 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 MSRB3Q8IXL7 192 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 TMEM38BQ9NVV0 291 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 TMED3Q9Y3Q3 217 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 TCRBV16S1A1N1A0A5B0 115 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 CPN1P15169 458 aa13.67□□□□□ -0.22
PTPRF-201ENST00000359947 INO80CQ6PI98 192 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-201ENST00000359947 GTF2H5Q6ZYL4 71 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms