RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ASB16Q96NS5 453 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 TMED3Q9Y3Q3 217 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 RAB29O14966 203 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 SSBP1Q04837 148 aaKnown RBP10.13□□□□□ -0.79
PTPN4-201ENST00000263708 KISS1Q15726 138 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 TMEM167BQ9NRX6 74 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 MRPS16Q9Y3D3 137 aaKnown RBP10.13□□□□□ -0.79
PTPN4-201ENST00000263708 N4BP2Q86UW6 1770 aaPredicted RBP10.13□□□□□ -0.79
PTPN4-201ENST00000263708 TMEM272A0A1B0GTI8 110 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 ISLRO14498 428 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 CLDN20P56880 219 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 MTCH2Q9Y6C9 303 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 SLC25A35Q3KQZ1 300 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF793Q6ZN11 406 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 TOX2Q96NM4 488 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 CHODLQ9H9P2 273 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 SRSF10O75494 262 aaKnown RBP10.13□□□□□ -0.79
PTPN4-201ENST00000263708 ASCL5Q7RTU5 278 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 STARD4Q96DR4 205 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 SLC6A1P30531 599 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 CALHM1Q8IU99 346 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF738Q8NE65 137 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 OR10J6PQ8NGY7 276 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 OR4X1Q8NH49 305 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 OR13C6PQ8NH95 151 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 COPS9Q8WXC6 57 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 B9D1Q9UPM9 204 aa10.13□□□□□ -0.79
PTPN4-201ENST00000263708 A0A087WUJ7 227 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 LINC01387J3KSC0 135 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 DNAL4O96015 105 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 CDK5R1Q15078 307 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 ASB13Q8WXK3 278 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 SMPD2O60906 423 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 GPR3P46089 330 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PARP11Q9NR21 331 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 IGHV3OR15-7A0A075B7D8 119 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 NPIPB6E9PJ23 425 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 CIRBPQ14011 172 aaKnown RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PTRH1Q86Y79 214 aaKnown RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 FAM24BQ8N5W8 94 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 OR2A5Q96R48 311 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 ZFP30Q9Y2G7 519 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 LAMB1P07942 1786 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PI4KAP42356 2102 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PRF1P14222 555 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 SLC17A2O00624 439 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PF4V1P10720 104 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 JUNBP17275 347 aaPredicted RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PRSS12P56730 875 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 UQCC3Q6UW78 93 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 VDAC1P21796 283 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 R3HDM4Q96D70 268 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 METTL26Q96S19 204 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 TP53BP1Q12888 1972 aaPredicted RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 ATXN7O15265 892 aaPredicted RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 ALX3O95076 343 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 LIAT1Q6ZQX7 453 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 KLHDC9Q8NEP7 349 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 PAM16Q9Y3D7 125 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF25P17030 456 aaPredicted RBP10.12□□□□□ -0.79
PTPN4-201ENST00000263708 LRRC75AQ8NAA5 344 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 RND1Q92730 232 aa10.12□□□□□ -0.79
PTPN4-201ENST00000263708 MEIG1Q5JSS6 88 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 IGKV6D-21A0A0A0MT36 114 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF253O75346 499 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 DHRS3O75911 302 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 FAM219AQ8IW50 185 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 CADM3Q8N126 398 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 VSTM2AQ8TAG5 236 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SOX21Q9Y651 276 aaPredicted RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 CDX1P47902 265 aaPredicted RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SOX8P57073 446 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 Q6ZSR9 355 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SGMS2Q8NHU3 365 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 DDB2Q92466 427 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 GABRA1P14867 456 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 CCR5P51681 352 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 RPS4XP62701 263 aaKnown RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 PABPC1L2AQ5JQF8 200 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SPINK14Q6IE38 97 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 WFDC5Q8TCV5 224 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 ANAPC16Q96DE5 110 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 CLDN34H7C241 214 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SNRPEP62304 92 aaKnown RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 LINC00303Q3SY05 128 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 FAM26EQ8N5C1 309 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 ZNF680Q8NEM1 530 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SPAG8Q99932 426 aaPredicted RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 AKAP11Q9UKA4 1901 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 HPXP02790 462 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 IGHV4-34P06331 123 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 PRSS2P07478 247 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 YBX1P67809 324 aaKnown RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 DPPA3Q6W0C5 159 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 OR10G8Q8NGN5 311 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 SPSB1Q96BD6 273 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 GHITMQ9H3K2 345 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 POLR2AP24928 1970 aaKnown RBP10.11□□□□□ -0.79
PTPN4-201ENST00000263708 RER1O15258 196 aa10.11□□□□□ -0.79
PTPN4-201ENST00000263708 GPX5O75715 221 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms