RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 OR2T29Q8NH02 315 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR51Q1Q8NH59 317 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR1S1Q8NH92 325 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 PIGXQ8TBF5 258 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ENKURQ8TC29 256 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ACTL9Q8TC94 416 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ZFAND1Q8TCF1 268 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RNASEH2CQ8TDP1 164 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 C15orf40Q8WUR7 153 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NELFBQ8WX92 580 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 DCPSQ96C86 337 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 DUS3LQ96G46 650 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 RBP7Q96R05 134 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR2M4Q96R27 311 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 HBEGFQ99075 208 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 STACQ99469 402 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 PDCD1LG2Q9BQ51 273 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 COA1Q9GZY4 146 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NEUROG2Q9H2A3 272 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 MFSD1Q9H3U5 465 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RDH14Q9HBH5 336 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 HRASLSQ9HDD0 168 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 MYOZ1Q9NP98 299 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 FBXO6Q9NRD1 293 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 SLC2A9Q9NRM0 540 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NLE1Q9NVX2 485 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 BABAM2Q9NXR7 383 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TAS2R9Q9NYW1 312 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 DNAJC27Q9NZQ0 273 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 FBXL3Q9UKT7 428 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RAB22AQ9UL26 194 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TFR2Q9UP52 801 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SNX24Q9Y343 169 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SNX10Q9Y5X0 201 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 BRCA1P38398 1863 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 AHDC1Q5TGY3 1603 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 COL6A5A8TX70 2615 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NOTCH1P46531 2555 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ANKRD11Q6UB99 2663 aaPredicted RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 IGHV2OR16-5A0A0B4J2B6 119 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 A0A0B4J2E0 115 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 FAM240AA0A1B0GVK7 77 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 A0A1B0GX12 115 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 DAPL1A0PJW8 107 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 M0R1B8 84 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 CCRL2O00421 344 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 BPY2O14599 106 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 GPR171O14626 319 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ACOX3O15254 700 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 EIF1BO60739 113 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 UGT2B11O75310 529 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ENTPD6O75354 484 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ZNF189O75820 626 aaPredicted RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 DCTN3O75935 186 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 GLSO94925 669 aaPredicted RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 KRT75O95678 551 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 PTTG1O95997 202 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ASS1P00966 412 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 HLA-DRAP01903 254 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ISG15P05161 165 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 RPS17P08708 135 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 RPSAP08865 295 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 CTXN2P0C2S0 81 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 LIMS3P0CW19 117 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 LIMS4P0CW20 117 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 COX5BP10606 129 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 SLC2A1P11166 492 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 UGT2B7P16662 529 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ATF1P18846 271 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 HTR1DP28221 377 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 LOXP28300 417 aaPredicted RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 HSD11B1P28845 292 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 GNRHRP30968 328 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 OPRK1P41145 380 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 EIF1P41567 113 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 OMPP47874 163 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 IDH2P48735 452 aaKnown RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 PSMB2P49721 201 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 SERPINB9P50453 376 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ERFP50548 548 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ZNF138P52744 262 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 STC1P52823 247 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 DLX6P56179 175 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 MTPNP58546 118 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 TAS2R31P59538 309 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 CD164Q04900 197 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 IL15RAQ13261 267 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 NAB1Q13506 487 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ZNF266Q14584 549 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 GUSBP1Q15486 140 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ZNF726P1Q15940 193 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 GCSAMLQ5JQS6 135 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 OR10J3Q5JRS4 329 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 AVPI1Q5T686 147 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 ZFP1Q6P2D0 407 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 FAM173BQ6P4H8 233 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 USP50Q70EL3 339 aaPredicted RBP1.46□□□□□ -2.18
CD44-239ENST00000639002 ITPRIPQ8IWB1 547 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 WDFY1Q8IWB7 410 aa1.46□□□□□ -2.18
CD44-239ENST00000639002 C10orf67Q8IYJ2 551 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms