RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ERP29P30040 261 aaKnown RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 P2RX3P56373 397 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 ZP1P60852 638 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 DYNC1I2Q13409 638 aaKnown RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 HABP2Q14520 560 aaPredicted RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 FAM189A2Q15884 450 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 SMN1Q16637 294 aaKnown RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 SPIN3Q5JUX0 258 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 Q6P435 159 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 LIAT1Q6ZQX7 453 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 OR4C13Q8NGP0 309 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 NKX3-1Q99801 234 aaPredicted RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 PDCD1LG2Q9BQ51 273 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 COMMD4Q9H0A8 199 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 ZCCHC4Q9H5U6 513 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 ZNF702PQ9H963 129 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 RAB18Q9NP72 206 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 EXOSC4Q9NPD3 245 aaKnown RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 MRPS18AQ9NVS2 196 aaKnown RBP8.73□□□□□ -1.01
VPS39-208ENST00000564994 TCF19Q9Y242 345 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 SESN1Q9Y6P5 492 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 NOTCH3Q9UM47 2321 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 IGHV2-26A0A0B4J1V2 119 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 A0A0G2JK05 382 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 WBP4O75554 376 aaKnown RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 FADS2O95864 444 aaKnown RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 OCM2P0CE71 109 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 OCMP0CE72 109 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 LIMS3P0CW19 117 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 LIMS4P0CW20 117 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 GDNFP39905 211 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 GLIPR1P48060 266 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 GTF2A1P52655 376 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 AESQ08117 197 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 RAB40BQ12829 278 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 IL18R1Q13478 541 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 HERPUD1Q15011 391 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 PDLIM3Q53GG5 364 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 XAF1Q6GPH4 301 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 TMEM219Q86XT9 240 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 C10orf67Q8IYJ2 551 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 SAXO1Q8IYX7 474 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 PARP16Q8N5Y8 322 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 KLHDC1Q8N7A1 406 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 C11orf44Q8N8P7 122 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 OR2T6Q8NHC8 308 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 FAM110DQ8TAY7 271 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 CFHR4Q92496 578 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 RGP1Q92546 391 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 FOXRED1Q96CU9 486 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 Q96MT0 163 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 NPFFR1Q9GZQ6 430 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 TMEM133Q9H2Q1 129 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 INPP5EQ9NRR6 644 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 GLS2Q9UI32 602 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 UBE2J1Q9Y385 318 aaPredicted RBP8.72□□□□□ -1.01
VPS39-208ENST00000564994 HILPDAQ9Y5L2 63 aa8.72□□□□□ -1.01
VPS39-208ENST00000564994 TMEM212A6NML5 194 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 SLC33A1O00400 549 aaPredicted RBP8.71□□□□□ -1.02
VPS39-208ENST00000564994 SH2D1BO14796 132 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 SULT1B1O43704 296 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 ALX3O95076 343 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 TMEM225BP0DP42 221 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 ZNF44P15621 663 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 DYNLT3P51808 116 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 SCN1BQ07699 218 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 CDK5R1Q15078 307 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 KISS1Q15726 138 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 C2orf68Q2NKX9 166 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 UTF1Q5T230 341 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 MINOS1Q5TGZ0 78 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 PRAMEF5Q5TYX0 476 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 ZNF529Q6P280 563 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 C11orf88Q6PI97 169 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 Q6ZS46 218 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 Q6ZTK2 550 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 TRAPPC6BQ86SZ2 158 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 SERPINA12Q8IW75 414 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 Q8N2B8 174 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 OR51A2Q8NGJ7 313 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 OR5D14Q8NGL3 314 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 OR4P4Q8NGL7 312 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 OR5AK2Q8NH90 309 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 RPS4Y2Q8TD47 263 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 CORO2AQ92828 525 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 MRPL48Q96GC5 212 aaKnown RBP8.71□□□□□ -1.02
VPS39-208ENST00000564994 COQ2Q96H96 371 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 CDCA4Q9BXL8 241 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 CLEC7AQ9BXN2 247 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 RHOFQ9HBH0 211 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 NEK6Q9HC98 313 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 FGF20Q9NP95 211 aaPredicted RBP8.71□□□□□ -1.02
VPS39-208ENST00000564994 ABCB10Q9NRK6 738 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 SERTAD4Q9NUC0 356 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 RPL36Q9Y3U8 105 aaKnown RBP8.71□□□□□ -1.02
VPS39-208ENST00000564994 MINOS1-NBL1R4GNA1 71 aa8.71□□□□□ -1.02
VPS39-208ENST00000564994 TRGV10A0A0A0MS01 117 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 FAM172BPA6NC97 362 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 EBAG9O00559 213 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 BAG2O95816 211 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms