RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 HOXA4Q00056 320 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-201ENST00000359947 SLC38A11Q08AI6 406 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 MESP2Q0VG99 397 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 MOB1BQ7L9L4 216 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 FAM122BQ7Z309 247 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 GVQW1Q8N7I0 195 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF275Q9NSD4 429 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-201ENST00000359947 KCNJ3P48549 501 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 RNF24Q9Y225 148 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 CDC42EP2O14613 210 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 KIR2DS2P43631 304 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 TFPI2P48307 235 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 ASAH1Q13510 395 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF485Q8NCK3 441 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 OR5B21A6NL26 309 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 WDR61Q9GZS3 305 aaKnown RBP13.74□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF665Q9H7R5 613 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 SMIM18P0DKX4 95 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 CD37P11049 281 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 C19orf57Q0VDD7 668 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 ZIC1Q15915 447 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 UQCC2Q9BRT2 126 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 NKX6-2Q9C056 277 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 HEXA-AS1Q9H8Q6 139 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 GPR35Q9HC97 309 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 GEMIN2O14893 280 aaKnown RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 OR5AC1P0C628 307 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 RD3LP0DJH9 198 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 DYNC2LI1Q8TCX1 351 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 PDCD6O75340 191 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 IGHA1P01876 353 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 IGHA2P01877 340 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 RBPMS2Q6ZRY4 209 aaKnown RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 ZCCHC14Q8WYQ9 949 aaKnown RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 LIFP15018 202 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 TSPO2Q5TGU0 170 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 FA2HQ7L5A8 372 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 NIT2Q9NQR4 276 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 TMEFF2Q9UIK5 374 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 KRTDAPP60985 99 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 AESQ08117 197 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 BAK1Q16611 211 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 SLC16A12Q6ZSM3 486 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 SLC22A18ASQ8N1D0 253 aa13.73□□□□□ -0.21
PTPRF-201ENST00000359947 NEIL1Q96FI4 390 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-201ENST00000359947 MAP6Q96JE9 813 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 GPR27Q9NS67 375 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 MPC1Q9Y5U8 109 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 PSG6Q00889 435 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 C9orf40Q8IXQ3 194 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 OR2J1Q9GZK6 312 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 PRR13Q9NZ81 148 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 CDK5Q00535 292 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 DGAT2L7PQ6IED9 249 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 ASCL5Q7RTU5 278 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 ZDHHC11Q9H8X9 412 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 COL18A1P39060 1754 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 FGF8P55075 233 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-201ENST00000359947 CLEC9AQ6UXN8 241 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 OR4D10Q8NGI6 311 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 GMPPAQ96IJ6 420 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-201ENST00000359947 SLC25A10Q9UBX3 287 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-201ENST00000359947 OOEPA6NGQ2 149 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 PRR19A6NJB7 356 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 FXYD1O00168 92 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 CD200P41217 278 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 RSPO4Q2I0M5 234 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-201ENST00000359947 OR2H1Q9GZK4 316 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 UCK1Q9HA47 277 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 SNRNP200O75643 2136 aaKnown RBP13.72□□□□□ -0.21
PTPRF-201ENST00000359947 KIAA0040Q15053 153 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 C12orf10Q9HB07 376 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 C1RLQ9NZP8 487 aa13.72□□□□□ -0.21
PTPRF-201ENST00000359947 FPR2P25090 351 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 OR5C1Q8NGR4 320 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 ASCL3Q9NQ33 180 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 PRSS44E7EML9 344 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 CD160O95971 181 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 CD40P25942 277 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 GUCA2BQ16661 112 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 C12orf73Q69YU5 71 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 CACNA1GO43497 2377 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 FBXW9Q5XUX1 488 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 OR2M3Q8NG83 312 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 OR10A7Q8NGE5 316 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 OR4S2Q8NH73 311 aa13.71□□□□□ -0.21
PTPRF-201ENST00000359947 OR2W3Q7Z3T1 314 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 DUSP21Q9H596 190 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 ZNF629Q9UEG4 869 aaPredicted RBP13.71□□□□□ -0.22
PTPRF-201ENST00000359947 ICMTO60725 284 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 CLDN20P56880 219 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 MMDQ15546 238 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 MESTQ5EB52 335 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 DYRK2Q92630 601 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 R3HDM4Q96D70 268 aa13.71□□□□□ -0.22
PTPRF-201ENST00000359947 NXF2Q9GZY0 626 aaKnown RBP13.71□□□□□ -0.22
PTPRF-201ENST00000359947 ACP1P24666 158 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 LSM11P83369 360 aaKnown RBP eCLIP13.7□□□□□ -0.22
PTPRF-201ENST00000359947 FHL5Q5TD97 284 aa13.7□□□□□ -0.22
PTPRF-201ENST00000359947 ZAR1Q86SH2 424 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms