RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PRR13Q9NZ81 148 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 MPC1Q9Y5U8 109 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 ARID1AO14497 2285 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 TRDCB7Z8K6 153 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 FNDC7Q5VTL7 733 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 PET117Q6UWS5 81 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 LRP11Q86VZ4 500 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 RNF2Q99496 336 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 NPAS1Q99742 590 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 MISP3Q96FF7 219 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 A0A1W2PN81 502 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 LSM6P62312 80 aaKnown RBP13.13□□□□□ -0.31
CHD4-201ENST00000357008 IL11RAQ14626 422 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 FAM74A3Q4VXF1 159 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 SNX22Q96L94 193 aa13.13□□□□□ -0.31
CHD4-201ENST00000357008 MS4A7Q9GZW8 240 aaPredicted RBP13.13□□□□□ -0.31
CHD4-201ENST00000357008 MYOZ1Q9NP98 299 aaPredicted RBP13.13□□□□□ -0.31
CHD4-201ENST00000357008 A0A1W2PQD3 144 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ZNF253O75346 499 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 GNG10P50151 68 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ELOBQ15370 118 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 TSPO2Q5TGU0 170 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 C10orf111Q8N326 155 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 OR10AC1Q8NH08 325 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 C11orf94C9JXX5 98 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 LANCL1O43813 399 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 NEURL1O76050 574 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ANKRD34CP0C6C1 535 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 OR3A1P47881 315 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ALX4Q9H161 411 aaPredicted RBP13.12□□□□□ -0.31
CHD4-201ENST00000357008 IL36GQ9NZH8 169 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ASCC3Q8N3C0 2202 aaKnown RBP13.12□□□□□ -0.31
CHD4-201ENST00000357008 SEC11BP0C7V7 166 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 GZMMP51124 257 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 OR10D3Q8NH80 312 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 ANGPTL4Q9BY76 406 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 TMEM191AQ9H0A3 160 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 M0QZ24 198 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 CDS2O95674 445 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 CD160O95971 181 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 SP1P08047 785 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 CAMPP49913 170 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 TRA2AQ13595 282 aaKnown RBP eCLIP13.12□□□□□ -0.314e-8■■■■□ 20
CHD4-201ENST00000357008 PPP1R3EQ9H7J1 279 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 MSL2Q9HCI7 577 aa13.12□□□□□ -0.31
CHD4-201ENST00000357008 MRPL24Q96A35 216 aaKnown RBP13.12□□□□□ -0.31
CHD4-201ENST00000357008 FAM87AP0C7U9 286 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 CTGFP29279 349 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 PSG6Q00889 435 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 HLA-DRB5Q30154 266 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 VSTM2LQ96N03 204 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 ZFP64Q9NPA5 681 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 SLC7A10Q9NS82 523 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 PCDHGA9Q9Y5G4 932 aaKnown RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 IGHV1OR21-1A0A087WYE8 117 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 H3BQ15 152 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 SRD5A2P31213 254 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 CADM4Q8NFZ8 388 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 ASB5Q8WWX0 329 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 TRAV8-7A0A075B6U6 113 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 M0R2Z0 102 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 CIDEAO60543 219 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 ITGBL1O95965 494 aaPredicted RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 RPS4XP62701 263 aaKnown RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 FOXO1Q12778 655 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 COL19A1Q14993 1142 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 MPV17LQ2QL34 196 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 MRGPRGQ86SM5 289 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 SEBOXQ9HB31 216 aaPredicted RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 TECRQ9NZ01 308 aaKnown RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 TNFSF18Q9UNG2 199 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 NUP214P35658 2090 aaPredicted RBP13.11□□□□□ -0.31
CHD4-201ENST00000357008 DEFB109BQ30KR1 87 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 SPINK9Q5DT21 86 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 ADTRPQ96IZ2 230 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 OR1A1Q9P1Q5 309 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 PITPNC1Q9UKF7 332 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 ZNF98A6NK75 572 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 EWSR1Q01844 656 aaKnown RBP eCLIP13.11□□□□□ -0.31
CHD4-201ENST00000357008 Q56UQ5 140 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 LYRM7Q5U5X0 104 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 MFRPQ9BY79 579 aa13.11□□□□□ -0.31
CHD4-201ENST00000357008 FAM74A7A6NL05 159 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 NCBP2LA6PVI3 153 aaKnown RBP13.1□□□□□ -0.31
CHD4-201ENST00000357008 CD226Q15762 336 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 BLNKQ8WV28 456 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 PPYP01298 95 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 OR4S2Q8NH73 311 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 SLC2A9Q9NRM0 540 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 P4HTMQ9NXG6 502 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 UBE2L3P68036 154 aaKnown RBP13.1□□□□□ -0.31
CHD4-201ENST00000357008 HLA-BQ31612 363 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 MRGPRDQ8TDS7 321 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 GAL3ST2Q9H3Q3 398 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 PKIAP61925 76 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 FAM209AQ5JX71 171 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 ZNF383Q8NA42 475 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 LRRC29Q8WV35 223 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 IGHV3-43A0A0B4J1X8 118 aa13.1□□□□□ -0.31
CHD4-201ENST00000357008 IGHV3-43DP0DP04 118 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms