RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TRIP13Q15645 432 aaPredicted RBP1.48□□□□□ -2.17
CD44-239ENST00000639002 ACTL10Q5JWF8 245 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 SPOPLQ6IQ16 392 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 SLC13A5Q86YT5 568 aaPredicted RBP1.48□□□□□ -2.17
CD44-239ENST00000639002 C10orf107Q8IVU9 208 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 FAM71AQ8IYT1 594 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 CYP4Z2PQ8N1L4 340 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 Q8N402 240 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 OR2Y1Q8NGV0 311 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 PIFOQ8TCI5 191 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 DYNC2LI1Q8TCX1 351 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 TMEM234Q8WY98 164 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 FLYWCH2Q96CP2 140 aaKnown RBP1.48□□□□□ -2.17
CD44-239ENST00000639002 DYNLL2Q96FJ2 89 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 GALNT14Q96FL9 552 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 NARS2Q96I59 477 aaKnown RBP1.48□□□□□ -2.17
CD44-239ENST00000639002 ADTRPQ96IZ2 230 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 CCDC42Q96M95 316 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ZNF681Q96N22 645 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 APOL4Q9BPW4 351 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 TBL1YQ9BQ87 522 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 AGMATQ9BSE5 352 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 C9orf16Q9BUW7 83 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ZNF717Q9BY31 904 aaPredicted RBP1.48□□□□□ -2.17
CD44-239ENST00000639002 LHX5Q9H2C1 402 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 RHOFQ9HBH0 211 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ACOT13Q9NPJ3 140 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 PLEKHJ1Q9NW61 149 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 STOML2Q9UJZ1 356 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 SLC7A11Q9UPY5 501 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ACOT9Q9Y305 439 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ITPR3Q14573 2671 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 KIAA1109Q2LD37 5005 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 ADAMTS13Q76LX8 1427 aa1.48□□□□□ -2.17
CD44-239ENST00000639002 KIAA0232Q92628 1395 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 EVC2Q86UK5 1308 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 BDP1A6H8Y1 2624 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TRAV8-4A0A0B4J246 113 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 IGKV2-24A0A0C4DH68 120 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TMEM114B3SHH9 223 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 C9J4A7 227 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 E5RI56 91 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 H0Y980 276 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TNFRSF11BO00300 401 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 GABRPO00591 440 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 MYL12BO14950 172 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ERI3O43414 337 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 ATP8B1O43520 1251 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 DENRO43583 198 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 STX10O60499 249 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ADAP1O75689 374 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RP2O75695 350 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SLC22A5O76082 557 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NSA2O95478 260 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 TTC4O95801 387 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 IFNA5P01569 189 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 P01737 135 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 HLA-AP01891 365 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 CALB1P05937 261 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 CD3GP09693 182 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SLC35G6P0C7Q6 338 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 LIPCP11150 499 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ZNF7P17097 686 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 USF1P22415 310 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 PFN2P35080 140 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 GPX4P36969 197 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 PPP1R2P41236 205 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 FABP6P51161 128 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RND2P52198 227 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NKX2-5P52952 324 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 OR12D2P58182 307 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RAB14P61106 215 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ARF6P62330 175 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SLC35A1P78382 337 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RPL18AQ02543 176 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 BNIP2Q12982 314 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 DYNC1I2Q13409 638 aaKnown RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 ZBTB6Q15916 424 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 IMPG1Q17R60 797 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 CLEC12BQ2HXU8 276 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 MPV17L2Q567V2 206 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 CLVS2Q5SYC1 327 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 FAM27D1Q5T7N8 215 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SYT6Q5T7P8 510 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 OR2T5Q6IEZ7 315 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NIPAL1Q6NVV3 410 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 PPP1R2P3Q6NXS1 205 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 CEMP1Q6PRD7 247 aaPredicted RBP1.47□□□□□ -2.17
CD44-239ENST00000639002 UGT2A3Q6UWM9 527 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 DRAM2Q6UX65 266 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NPSR1Q6W5P4 371 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 NT5DC3Q86UY8 548 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 RAB43Q86YS6 212 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 TRAPPC5Q8IUR0 188 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 SLC30A8Q8IWU4 369 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 COX18Q8N8Q8 333 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 ACBD4Q8NC06 268 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR4K17Q8NGC6 315 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR11H7Q8NGC8 314 aa1.47□□□□□ -2.17
CD44-239ENST00000639002 OR52E2Q8NGJ4 325 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms