RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 AADACL3Q5VUY0 350 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 CLEC18BQ6UXF7 455 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 LHFPL2Q6ZUX7 228 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 FGFBP3Q8TAT2 258 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 BORCS8Q96FH0 119 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 CCDC120Q96HB5 630 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 RTBDNQ9BSG5 229 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 REG4Q9BYZ8 158 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 RGCCQ9H4X1 137 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 CHMP1AQ9HD42 196 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 NUP50Q9UKX7 468 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 NOSIPQ9Y314 301 aaKnown RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 RNF222A6NCQ9 220 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 SPRY1O43609 319 aaPredicted RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 MRPL33O75394 65 aaKnown RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 AGFG2O95081 481 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 NRASP01111 189 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 IGHV3-9P01782 118 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 CRHP06850 196 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 RNF224P0DH78 156 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 PSMB6P28072 239 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 C1orf185Q5T7R7 199 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 OVCH2Q7RTZ1 564 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 TMEM45BQ96B21 275 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 DMRTA2Q96SC8 542 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 VKORC1Q9BQB6 163 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 NMES1Q9C002 83 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 MBD2Q9UBB5 411 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 MCTS1Q9ULC4 181 aaKnown RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 ZSCAN5BA6NJL1 495 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 ZG16O60844 167 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 LUMP51884 338 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-202ENST00000374876 ARPC4P59998 168 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 ACSF3Q4G176 576 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-202ENST00000374876 SEM1Q6ZVN7 128 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF471Q9BX82 626 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-202ENST00000374876 C1QTNF6Q9BXI9 259 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 SLC25A32Q9H2D1 315 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 RAB18Q9NP72 206 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 IGKV1-27A0A075B6S5 117 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 A0A0B4J2A0 478 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 A0A1B0GW55 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L2P0CJ85 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L3P0CJ86 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L4P0CJ87 422 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L5P0CJ88 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L6P0CJ89 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4L7P0CJ90 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 GLI4P10075 376 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 GLRA1P23415 457 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 ADORA2A-AS1P86434 159 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 SURF2Q15527 256 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-202ENST00000374876 TAF9Q16594 264 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 FAM209AQ5JX71 171 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 TSPO2Q5TGU0 170 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 OR1S1Q8NH92 325 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 EMG1Q92979 244 aaKnown RBP13.39□□□□□ -0.27
CCDC40-202ENST00000374876 WDR13Q9H1Z4 485 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 DUX4Q9UBX2 424 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 SHPKQ9UHJ6 478 aa13.39□□□□□ -0.27
CCDC40-202ENST00000374876 PGAM2P15259 253 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 SUPT4H1P63272 117 aaKnown RBP13.38□□□□□ -0.27
CCDC40-202ENST00000374876 FAM3AP98173 230 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF92Q03936 586 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 TMEM42Q69YG0 159 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 SIGIRRQ6IA17 410 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 ZNF100Q8IYN0 542 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 ZSCAN4Q8NAM6 433 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-202ENST00000374876 RELL2Q8NC24 303 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-202ENST00000374876 COL12A1Q99715 3063 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 SLC7A11Q9UPY5 501 aa13.38□□□□□ -0.27
CCDC40-202ENST00000374876 C14orf166Q9Y224 244 aaKnown RBP13.38□□□□□ -0.27
CCDC40-202ENST00000374876 IGKV3D-15A0A087WSY6 115 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 hCG_38984A0A1B0GV85 526 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 SCO1O75880 301 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 MMP7P09237 267 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ZP3P21754 424 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 NRN1LQ496H8 165 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PABPC1L2AQ5JQF8 200 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 C17orf50Q8WW18 174 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 DCUN1D4Q92564 292 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 DHRS9Q9BPW9 319 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 HDHD3Q9BSH5 251 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 FAAP24Q9BTP7 215 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 METTL8Q9H825 291 aaKnown RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PARPBPQ9NWS1 579 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PRR13Q9NZ81 148 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 HSF4Q9ULV5 492 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 EDARQ9UNE0 448 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 USP9XQ93008 2570 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 IGKV1D-8A0A087WSZ0 117 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 F5H0A9 414 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 TEX46H3BTG2 121 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 XRCC2O43543 280 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 ADAP1O75689 374 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 SYNGR4O95473 234 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 KNG1P01042 644 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 HOXD4P09016 255 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-202ENST00000374876 M6PRP20645 277 aa13.37□□□□□ -0.27
CCDC40-202ENST00000374876 PTGER4P35408 488 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms