RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SIGLECL1Q8N7X8 197 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 SLC25A40Q8TBP6 338 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 EAF1Q96JC9 268 aaPredicted RBP13.77□□□□□ -0.2
PTPRF-201ENST00000359947 PLEKHA2Q9HB19 425 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 UFC1Q9Y3C8 167 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 USP54Q70EL1 1684 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 SLC25A1P53007 311 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 BTG1P62324 171 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 CARFQ8N187 725 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 PTP4A1Q93096 173 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 FKBP11Q9NYL4 201 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 CXorf51AA0A1B0GTR3 108 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 PYCARD-AS1I3L0S3 204 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 ADRA2AP08913 450 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 LINC00303Q3SY05 128 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 WDR89Q96FK6 387 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-201ENST00000359947 CACNG5Q9UF02 275 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 BCORQ6W2J9 1755 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 A0A1W2PQF6 199 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 ADAM10O14672 748 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 HAND1O96004 215 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 PTBP1P26599 531 aaKnown RBP eCLIP13.77□□□□□ -0.213e-7■■■■□ 21.9
PTPRF-201ENST00000359947 PTTG1IPP53801 180 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF574Q6ZN55 896 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-201ENST00000359947 PRSS42Q7Z5A4 293 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 CHRDL1Q9BU40 450 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 SIRT3Q9NTG7 399 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-201ENST00000359947 A0A1W2PPQ1 181 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 MRPS11P82912 194 aaKnown RBP13.77□□□□□ -0.21
PTPRF-201ENST00000359947 AUP1Q9Y679 476 aa13.77□□□□□ -0.21
PTPRF-201ENST00000359947 RFPL4AA6NLU0 287 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 RFPL4AL1F8VTS6 287 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 SCO1O75880 301 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 ZFPL1O95159 310 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 MDH2P40926 338 aaKnown RBP13.76□□□□□ -0.21
PTPRF-201ENST00000359947 WNT3P56703 355 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 C1orf185Q5T7R7 199 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-201ENST00000359947 GYPAP02724 150 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF528Q3MIS6 628 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 LILRB1Q8NHL6 650 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-201ENST00000359947 VPS25Q9BRG1 176 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 KPTNQ9Y664 436 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 CYSLTR2Q9NS75 346 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 RNF7Q9UBF6 113 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 TRAV39A0A0B4J263 110 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 RNFT1Q5M7Z0 435 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 NCR3LG1Q68D85 454 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 OR6X1Q8NH79 312 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 SEC16AO15027 2179 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 C3orf85A0A1B0GTC6 90 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 HIST1H1DP16402 221 aaKnown RBP13.76□□□□□ -0.21
PTPRF-201ENST00000359947 OR2B8PP59922 312 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 NSUN5P2Q63ZY6 315 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 TMEM229BQ8NBD8 167 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 A0A1W2PPE3 182 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 EPOPA6NHQ4 379 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 LALBAP00709 142 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 TMEM128Q5BJH2 165 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 ADAMTS17Q8TE56 1095 aa13.76□□□□□ -0.21
PTPRF-201ENST00000359947 OXA1LQ15070 435 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 SLC24A4Q8NFF2 622 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 C19orf43Q9BQ61 176 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 SIRT5Q9NXA8 310 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 CACFD1Q9UGQ2 172 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 TRAV1-2A0A0B4J238 106 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 GNG7O60262 68 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 SEMA7AO75326 666 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 ATP1A1-AS1Q5TC04 95 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 HILPDAQ9Y5L2 63 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 ASPDHA6ND91 283 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 LANCL1O43813 399 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 IGHV4-34P06331 123 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 SP9P0CG40 484 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 ASB5Q8WWX0 329 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 UQCC1Q9NVA1 299 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 ARID1AO14497 2285 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 TDRD15B5MCY1 1934 aaKnown RBP13.75□□□□□ -0.21
PTPRF-201ENST00000359947 PNPP00491 289 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 TRAT1Q6PIZ9 186 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 OR10AC1Q8NH08 325 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 PDZK1IP1Q13113 114 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 ZNF141Q15928 474 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 MDP1Q86V88 176 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 CABLES2Q9BTV7 478 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 MS4A5Q9H3V2 200 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 WDR13Q9H1Z4 485 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 RAB18Q9NP72 206 aa13.75□□□□□ -0.21
PTPRF-201ENST00000359947 KIAA1551Q9HCM1 1747 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 LIPT2A6NK58 231 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 LIMS3P0CW19 117 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 LIMS4P0CW20 117 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 CD96P40200 585 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 GPR6P46095 362 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-201ENST00000359947 ETV3LQ6ZN32 361 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 MED30Q96HR3 178 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 PIGMQ9H3S5 423 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 TRAPPC4Q9Y296 219 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 G0S2P27469 103 aa13.74□□□□□ -0.21
PTPRF-201ENST00000359947 CEP290O15078 2479 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms