RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TMEM189-UBE2V1I3L0A0 370 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 ST6GAL1P15907 406 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 FUT3P21217 361 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 RPS4Y1P22090 263 aaKnown RBP10.18□□□□□ -0.78
PTPN4-201ENST00000263708 TOMM34Q15785 309 aaPredicted RBP10.18□□□□□ -0.78
PTPN4-201ENST00000263708 GATA6Q92908 595 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 MAP1LC3BQ9GZQ8 125 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 PGPEP1Q9NXJ5 209 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 TMSB15BA0A087X1C1 80 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 DIO1P49895 249 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 DEFB124Q8NES8 71 aa10.18□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM129A0AVI4 362 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TFAP2AP05549 437 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 WNT5AP41221 380 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 CA13Q8N1Q1 262 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 MMP26Q9NRE1 261 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 GEMIN2O14893 280 aaKnown RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TSPAN13O95857 204 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 PAQR6Q6TCH4 344 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 PERPQ96FX8 193 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 RAXQ9Y2V3 346 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF273Q14593 569 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 C21orf62-AS1Q17RA5 79 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 OR4P4Q8NGL7 312 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM191AQ9H0A3 160 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 PTPRZ1P23471 2315 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TRAV17A0A0B4J275 112 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 K7ERU9 68 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 LMX1BO60663 402 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 LGALSLQ3ZCW2 172 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 FAM109BQ6ICB4 259 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM251Q8N6I4 163 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 OR10G4Q8NGN3 311 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 OR10G9Q8NGN4 311 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 OR10G7Q8NGN6 311 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 FOXB1Q99853 325 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 VN1R1Q9GZP7 353 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF385DQ9H6B1 395 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 WNT1P04628 370 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM128Q5BJH2 165 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 PRNTQ86SH4 94 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 NUDT8Q8WV74 236 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 HOXC4P09017 264 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 CAPZBP47756 277 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 SMAD4Q13485 552 aaKnown RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 HOXC11O43248 304 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 SBK3P0C264 359 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 TMIGD3P0DMS9 266 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 HLA-GP17693 338 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 PTGFRP43088 359 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 ELOVL1Q9BW60 279 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF552Q9H707 407 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-201ENST00000263708 FGF22Q9HCT0 170 aa10.17□□□□□ -0.78
PTPN4-201ENST00000263708 MBLAC1A4D2B0 266 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-201ENST00000263708 POM121BA6NF01 834 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 PPICP45877 212 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 GFERP55789 205 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 BHLHA15Q7RTS1 189 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF384Q8TF68 577 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 SIGLEC11Q96RL6 698 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 MS4A7Q9GZW8 240 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-201ENST00000263708 MMP24Q9Y5R2 645 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 KDM3BQ7LBC6 1761 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 LTBP3Q9NS15 1303 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 A0A0B4J293 547 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ADAT3Q96EY9 351 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-201ENST00000263708 P2RX4Q99571 388 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 LRP12Q9Y561 859 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 MBTPS2O43462 519 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 TM4SF20Q53R12 229 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF441Q8N8Z8 693 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 TRAV38-1A0A0B4J264 116 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 C3orf85A0A1B0GTC6 90 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ASAH1Q13510 395 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 PELI3Q8N2H9 469 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 DOK1Q99704 481 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 GPR61Q9BZJ8 451 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ZBP1Q9H171 429 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 FAM53AQ6NSI3 398 aaPredicted RBP10.16□□□□□ -0.78
PTPN4-201ENST00000263708 UBALD2Q8IYN6 164 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 CCL4L1Q8NHW4 92 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 A0A1B0GUH1 482 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 LINC01553A4QN01 128 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 OOEPA6NGQ2 149 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 CGB1A6NKQ9 187 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 IFITM10A6NMD0 228 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 COX6CP09669 75 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF137PP52743 207 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 EBLN2Q6P2I7 272 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 SYT8Q8NBV8 401 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 ORAI1Q96D31 301 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 IGHV3-21A0A0B4J1V1 117 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM238LA0A1B0GVL6 79 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 A6NJY4 79 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 MPDU1O75352 247 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 LOXL3P58215 753 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 SIGIRRQ6IA17 410 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 Q8WTZ3 238 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 FAM222BQ8WU58 562 aa10.16□□□□□ -0.78
PTPN4-201ENST00000263708 OIT3Q8WWZ8 545 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms