RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 CLDN15P56746 228 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CLDN18P56856 261 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 PCBD1P61457 104 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF345Q14585 488 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ATXN7L3Q14CW9 347 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CNN3Q15417 329 aaKnown RBP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 PDSS1Q5T2R2 415 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 RIPPLY2Q5TAB7 128 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 RTL6Q6ICC9 239 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 RGS7BPQ6MZT1 257 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 KCNRGQ8N5I3 272 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 THAP6Q8TBB0 222 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CXorf58Q96LI9 332 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 PRDM14Q9GZV8 571 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 C5orf66Q9H5L9 145 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 SDHAF2Q9NX18 166 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 C13orf42A0A1B0GVH6 325 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 CEACAM18A8MTB9 384 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 CYTIPO60759 359 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF708P17019 499 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 GABRR1P24046 479 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 FPR2P25090 351 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 UBA52P62987 128 aaKnown RBP13.43□□□□□ -0.26
CCDC40-202ENST00000374876 PSG4Q00888 419 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 HGFACQ04756 655 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 CHRFAM7AQ494W8 412 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.43□□□□□ -0.26
CCDC40-202ENST00000374876 TMEM185AQ8NFB2 350 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 ABHD3Q8WU67 409 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF845Q96IR2 970 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-202ENST00000374876 VRK1Q99986 396 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-202ENST00000374876 GPR35Q9HC97 309 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 PLEKHJ1Q9NW61 149 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 MED9Q9NWA0 146 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 EHFQ9NZC4 300 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 PFDN2Q9UHV9 154 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 UBR5O95071 2799 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-202ENST00000374876 FLNCQ14315 2725 aa13.43□□□□□ -0.26
CCDC40-202ENST00000374876 FAM230AA0A1W2PPH8 454 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 DBX1A6NMT0 343 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 SDCBPO00560 298 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 HTR3BO95264 441 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 CSTBP04080 98 aaKnown RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 PRKACBP22694 351 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 PPA1Q15181 289 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 RSU1Q15404 277 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 C4orf17Q53FE4 359 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 ACOT7LQ6ZUV0 252 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 PDZD9Q8IXQ8 264 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 OR13G1Q8NGZ3 307 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 MAFIPQ8WZ33 124 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 OR2H1Q9GZK4 316 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 METTL9Q9H1A3 318 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 PPA2Q9H2U2 334 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF701Q9NV72 531 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 MEMO1Q9Y316 297 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 FAM215AQ9Y5M1 114 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 SESN1Q9Y6P5 492 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 DIDO1Q9BTC0 2240 aaKnown RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 GCN1Q92616 2671 aaKnown RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 LINC01387J3KSC0 135 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 CA11O75493 328 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 RLN2P04090 185 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 SERPINA5P05154 406 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 SERPINF1P36955 418 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 BAMBIQ13145 260 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 NKAPLQ5M9Q1 402 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 C6orf201Q7Z4U5 140 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 INO80EQ8NBZ0 244 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-202ENST00000374876 OR5AP2Q8NGF4 316 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 ST8SIA2Q92186 375 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF391Q9UJN7 358 aa13.42□□□□□ -0.26
CCDC40-202ENST00000374876 TENM4Q6N022 2769 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 MFSD2BA6NFX1 497 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 FIGNL2A6NMB9 653 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 AHRRA9YTQ3 701 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 BCL2L11O43521 198 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 SFT2D2O95562 160 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 PLATP00750 562 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 PI3P19957 117 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 KRTAP27-1Q3LI81 207 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 PEG10Q86TG7 708 aaKnown RBP13.41□□□□□ -0.26
CCDC40-202ENST00000374876 LHFPL1Q86WI0 220 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 SKA3Q8IX90 412 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 SUN5Q8TC36 379 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 TMEM230Q96A57 120 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 Q96M66 194 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 TRIB1Q96RU8 372 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 WNT5BQ9H1J7 359 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 NARFLQ9H6Q4 476 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 RTTNQ86VV8 2226 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 PCNX1Q96RV3 2341 aa13.41□□□□□ -0.26
CCDC40-202ENST00000374876 ANGPTL7O43827 346 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 WDR1O75083 606 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 FARS2O95363 451 aaKnown RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 RBP2P50120 134 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 PRSS12P56730 875 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 CYCSP99999 105 aaKnown RBP13.4□□□□□ -0.26
CCDC40-202ENST00000374876 SLC9A3R2Q15599 337 aa13.4□□□□□ -0.26
CCDC40-202ENST00000374876 BEX5Q5H9J7 111 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms