RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 OR51I2Q9H344 312 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 THYN1Q9P016 225 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 G3V3Q6 166 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 MASP2O00187 686 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 SH2D5Q6ZV89 423 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 PPP1R1CQ8WVI7 109 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 FBP1P09467 338 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 CD226Q15762 336 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 LURAP1Q96LR2 239 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 PNLIPRP3Q17RR3 467 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 GAB4Q2WGN9 574 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 GLRX2Q9NS18 164 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 RGPD4Q7Z3J3 1758 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 GIPP09681 153 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 UCNP55089 124 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 AVPI1Q5T686 147 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 DGAT2L6Q6ZPD8 337 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 COL22A1Q8NFW1 1626 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 ADAMTSL1Q8N6G6 1762 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 A0A1W2PN81 502 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CD82P27701 267 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CHRNA7P36544 502 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 BHLHA9Q7RTU4 235 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 NPAP1Q9NZP6 1156 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 FGF2P09038 288 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 BCL3P20749 454 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 IGFBP7Q16270 282 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 TGIF2LYQ8IUE0 185 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 OR6C3Q9NZP0 311 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CELA2AP08217 269 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 TGIF1Q15583 401 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 NUFIP2Q7Z417 695 aaKnown RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CALHM3Q86XJ0 350 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 RBPMSQ93062 196 aaKnown RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 NTN4Q9HB63 628 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 ZMIZ1Q9ULJ6 1067 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 MED19A0JLT2 244 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 ZNF716A6NP11 495 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 SLC17A2O00624 439 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 GABRB1P18505 474 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 C2CD4CQ8TF44 421 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 ASB10Q8WXI3 467 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 RAB19A4D1S5 217 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CDK2AP1O14519 115 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 ENDOGQ14249 297 aaKnown RBP13.79□□□□□ -0.2
PTPRF-201ENST00000359947 CLEC2AQ6UVW9 174 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 OR10Z1Q8NGY1 313 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 LINC00052Q96N35 136 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 KCNK15Q9H427 330 aa13.79□□□□□ -0.2
PTPRF-201ENST00000359947 A1L4Q6 167 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ARRDC5A6NEK1 342 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 SP1P08047 785 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 CDC34P49427 236 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 TPPP2P59282 170 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 PMS2CLQ68D20 193 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 FAHD1Q6P587 224 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 LOC102723971A0A1B0GUV8 181 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ID4P47928 161 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 EVX1P49640 407 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 MIA3Q5JRA6 1907 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ATP6V1G2-DDX39BF2Z307 99 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 SMAD7O15105 426 aaKnown RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ZFP36L2P47974 494 aaKnown RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ETFRF1Q6IPR1 90 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 OR5R1Q8NH85 324 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 IGHV3-21A0A0B4J1V1 117 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 CD1EP15812 388 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 PAX5Q02548 391 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 NUBPLQ8TB37 319 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 TTTY12Q9BZ98 90 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 OPN3Q9H1Y3 402 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 LIPGQ9Y5X9 500 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 RNF224P0DH78 156 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 REG1BP48304 166 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 OR8B12Q8NGG6 310 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 FGF20Q9NP95 211 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 INSIG2Q9Y5U4 225 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 ARG1P05089 322 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 JUNBP17275 347 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 GAR1Q9NY12 217 aaKnown RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 FLRT3Q9NZU0 649 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 CLN8Q9UBY8 286 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 SNCGO76070 127 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 CCL8P80075 99 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 KIAA0141Q14154 515 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-201ENST00000359947 HGDQ93099 445 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 LRRC3BQ96PB8 259 aa13.78□□□□□ -0.2
PTPRF-201ENST00000359947 PLXNB2O15031 1838 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 DLL1O00548 723 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 DNPH1O43598 174 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 AMTP48728 403 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 CNTD2Q9H8S5 307 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 IL20Q9NYY1 176 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 RABAC1Q9UI14 185 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 ANKRD31Q8N7Z5 1873 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 PPP1R2P9O14990 202 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 CRXO43186 299 aaPredicted RBP13.77□□□□□ -0.2
PTPRF-201ENST00000359947 ANKRD34CP0C6C1 535 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 TUSC1Q2TAM9 212 aa13.77□□□□□ -0.2
PTPRF-201ENST00000359947 NHLRC1Q6VVB1 395 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms